LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g0958	ATGGAGGAGTTGGATAACCAGAGCTTAAGTAGACTTGTTATGGTTCATATCCTTTGCCTTCTTCTGTTTATCAGATCAGCTTTTGCAAGTGAAGGTTTTGTGAGCATAGCATGCTGTGCTGATTCAGATTATACAGATCCAAAGACTTCAGTAAATTACACATCAGATTTTAGTTTCTACCCAGAAAAAGCAAGTTGCTTAGACACAATTAAGTTTGTGGAGAACTATGGAGGCCATGGAAAAGCAAGGGTGTTTGGTATAGACAAAGGAAAAAGATGTTACAACTTGCCAACAATTAAGAATCAAGTGTATCTGCTAAGGGGCATATTTCCATCTGACGAATCTCCGAATTCCTCTTTTGATGTTACAATTGGGGTTACCTTATTAGGTAGGGTAGAGAAACCATCTCAGGAGGTGGAATTACTTGAAGGAATTTTCAGAGCTACAAAGAATTACACAGATTTCTGCCTGGTGACGGACGAAGAAGGAAGTCCTTATGTTTCATTGATTGAACTGCGGCCGTTGGATGAAGAGTACCTACAAGATTATTCCCCTTCTAGTGTCCTAAAAGTGATCACAAGAAATAACCTAGGGGCCACCGGAGATGACATCAGGTACCCACTTGACCAAAGTGACAGAATCTGGAAAGCTACTTCAAATCCGTCATCTTCTCCCATAACATTGAATGCAAACATTTCCAGCAACAATGCTAATTCCACACCTCCTCTACAAGTTTTACGAACCGCTCTTGCGCATTCTGAGCGATTGGAATTCATCCACAGTGGCCTTGACCCTGGGAATTCCGAATACCGTGTGATTCTCCACTTTCTTGAATTGAATAAGAGCGTCGGAGTGGGCAAAAGGGTGTTTGATATCTACGTCAATGGTGTCAACGAAGAGCCCAAGTTTGATATATTTGCTGGTGGATCGAACTACAGACAAGCTGTTTTGAACTTGTCGGCAAATGGTTCGTTGAATCTAACGTTGAGCAAGGCTTCTGGGTCTGAGAATGGACCGATTTGTAATGCATACGAGATCCTGAAGGTTATCCCTTGGATGCAGGAGACCAACCAAACAGACTCGGAAGTGATGTTGAAGGTGAGAGAGCAATTGTCAGAGAATAACAGAGGAAATAAAGAGCTGGAGAGTTGGACTGGAGACCCTTGCATTCTGTTTCCATGGCAGCATGTAGGTTGTCATCGTTTAAGTGGTCAACTTGTTATCACTAAACTGGATCTTTCTTCAAGTAATCTCCGAGGACCAATTCCTTCCAGTATCATTGAGTTGTCCAACTTAAAAATACTGAACCTGAGCTACAATAGCTTAACTGGAAATATCCCCTCATTTCTGCCTTCATCTTTGCTTACATCAATAGATCTGAGCCACAATGATCTCACAGGATCGCTGCCATGGACACTTCCCTTACTGCCACAACTAAAGACCTTGTATTTTGGCTGCAATAAGCGTATGAACAAGGAGATTCCAACTTCCTTGAACAGCTTAGAAAATACAGATTATGGAAGTTGCAAACCTGGAGACCCAGGAATTTCACAAAAGCATATTGTCATTGGCACTGTTACTTGTGGATTGGTCATGATCATTTTGGCTGTTGGAATTCTTTGTCGCTGCCATAGAAGAAAATTAGGGAAAAAATCTGATGAAAAGGGATACCCAACAACCACAAATTTAATTTTCTCTTTAACCAGTAAAGATGATTTCTTCGTAAAGTCATTATCCATTCAAACATTAACCCTGGAATACATAGAGGCAGCCACCCAAAACTACAAGACTTTGATTGGTGAAGGAGGGTTTGGGTCTGTTTACCGTGGCACTCTAGATGATGGCCAAGAAGTGGCAGTGAAGGTCCGTTCAGCCACATCAACCCAGGGAACTCGCGAATTTGACAACGAGGTAAACTTGCTCTCTGCTATACGGCATGAGAACCTGGTGACTCTTATTGGTTACTGTTGTGAAAAGGATCAACAAATTCTGGTGTATCCTTTTATGGCTAATGGTTCACTACAAGATAGGCTTTATGGGGAACCAGCGAAGAGAAAACCATTAGACTGGCCAACCAGGTTATCTATTGCTCTCGGTGCAGCTCGAGGTTTGTCATATCTTCATACGTTTTCGGGACGTTCTGTTATACATAGAGATGTCAAATCAAGCAACATACTTCTGGATCACAGCATGTGTGCCAAGGTAGCAGACTTTGGTTTCTCAAAATATGCTCCTCAGGAAGGAGACAGTTGTGCTTCTCTTGAAGTAAGAGGAACCGCAGGATATATGGACCCTGAGTACTATACAACCCAGCAACTATCTGCAAAGAGTGATGTATTTAGCTTTGGCATGGTTCTACTTGAAATTCTGACTGGCCGGGAACCTCTCGACACACAAAGACCGCGCAATGAGTGGAACTTGGTGGAATGGGCTAAACCATACATAAAGGCGTCGAAGATCGATGAAGTAGTGGATCCTAGCATCAAGGGAGGATATCATGCAGAGGCCATGTGGAGAGTAGTGGAAACAGCACTGACATGTATTGAACCATTCTCAGTGCATCGACCAATCATGGCTGATATTGTTCGTGAGTTGGAGGATGCTCTGATTATAGAAAACAATGCATCAGAATACATGAAGTCCATAGAAAGCCTTGGAGGATCAAATCGTTACTCCATTGTGATAGAGAAGAAGATGGTAGCCCCATCTCCATCTACAACAGAATCAACCGTCTCTCCCAAAACCATGTCCCACCTAGGGGTGTTTTGTGAAGCAAAACATCAGAAATGGCCAAGTCGATTTTCTTCAAGGGAGATCATTCAAACGCTCATTGCGTCAAAAGATGATGTTAGTGCATGA	2859	0.425	MEELDNQSLSRLVMVHILCLLLFIRSAFASEGFVSIACCADSDYTDPKTSVNYTSDFSFYPEKASCLDTIKFVENYGGHGKARVFGIDKGKRCYNLPTIKNQVYLLRGIFPSDESPNSSFDVTIGVTLLGRVEKPSQEVELLEGIFRATKNYTDFCLVTDEEGSPYVSLIELRPLDEEYLQDYSPSSVLKVITRNNLGATGDDIRYPLDQSDRIWKATSNPSSSPITLNANISSNNANSTPPLQVLRTALAHSERLEFIHSGLDPGNSEYRVILHFLELNKSVGVGKRVFDIYVNGVNEEPKFDIFAGGSNYRQAVLNLSANGSLNLTLSKASGSENGPICNAYEILKVIPWMQETNQTDSEVMLKVREQLSENNRGNKELESWTGDPCILFPWQHVGCHRLSGQLVITKLDLSSSNLRGPIPSSIIELSNLKILNLSYNSLTGNIPSFLPSSLLTSIDLSHNDLTGSLPWTLPLLPQLKTLYFGCNKRMNKEIPTSLNSLENTDYGSCKPGDPGISQKHIVIGTVTCGLVMIILAVGILCRCHRRKLGKKSDEKGYPTTTNLIFSLTSKDDFFVKSLSIQTLTLEYIEAATQNYKTLIGEGGFGSVYRGTLDDGQEVAVKVRSATSTQGTREFDNEVNLLSAIRHENLVTLIGYCCEKDQQILVYPFMANGSLQDRLYGEPAKRKPLDWPTRLSIALGAARGLSYLHTFSGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSCASLEVRGTAGYMDPEYYTTQQLSAKSDVFSFGMVLLEILTGREPLDTQRPRNEWNLVEWAKPYIKASKIDEVVDPSIKGGYHAEAMWRVVETALTCIEPFSVHRPIMADIVRELEDALIIENNASEYMKSIESLGGSNRYSIVIEKKMVAPSPSTTESTVSPKTMSHLGVFCEAKHQKWPSRFSSREIIQTLIASKDDVSA	952

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g0958	952	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	669	878	-	-
	Lele51g0958	952	SMART	serkin_6	595	857	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele51g0958	952	Pfam	Protein tyrosine and serine/threonine kinase	596	863	IPR001245	GO:0004672\|GO:0006468
	Lele51g0958	952	Gene3D	Phosphorylase Kinase; domain 1	563	668	-	-
	Lele51g0958	952	Gene3D	Transferase(Phosphotransferase) domain 1	669	890	-	-
	Lele51g0958	952	Pfam	Leucine rich repeat	409	465	IPR001611	GO:0005515
	Lele51g0958	952	SUPERFAMILY	Protein kinase-like (PK-like)	574	865	IPR011009	-
	Lele51g0958	952	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	715	727	IPR008271	GO:0004672\|GO:0006468
	Lele51g0958	952	ProSiteProfiles	Protein kinase domain profile.	593	870	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele51g0958	952	ProSiteProfiles	Leucine-rich repeat profile.	431	453	IPR001611	GO:0005515
	Lele51g0958	952	Gene3D	Ribonuclease Inhibitor	356	510	IPR032675	-
	Lele51g0958	952	PANTHER	OS07G0107800 PROTEIN-RELATED	34	869	-	-
	Lele51g0958	952	Pfam	Malectin-like domain	41	349	IPR024788	-
	Lele51g0958	952	FunFam	Leucine-rich repeat receptor-like kinase	360	472	-	-
	Lele51g0958	952	Gene3D	-	190	349	-	-
	Lele51g0958	952	SUPERFAMILY	L domain-like	380	502	-	-
	Lele51g0958	952	CDD	STKc_IRAK	599	866	-	-
	Lele51g0958	952	FunFam	Nodulation receptor kinase	558	668	-	-
	Lele51g0958	952	ProSitePatterns	Protein kinases ATP-binding region signature.	599	621	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g0958	Lele-ChrLele51	6044827	6051608	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g0958	12	872	Receptor kinase-like Gene Family	AT1G67720	35.430	4.66e-142	445

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Lele51g0958		Malectin_like	2.9e-49	CL0202

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele49g0944	49	5943934	5949527	Lele51g0958	51	6044827	6051608	hybridization
	Lele50g1003	50	6396700	6402342	Lele51g0958	51	6044827	6051608	hybridization