Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0954 ATGGAGCTTACTCAACTCGGTTTTCTGGAGGAGCTTCTAACTCCAAGAAGAGACACTTGGAGCACTTTTTCCTCAGGTTTGGGCGAGATATTCCCCAACAATGATTGGAGTTTTAATTCTTTTGAAGATAACCCACCTTTAGCTCCTTTGAATCCTCCATTACCTCCATTTTTCACGCAACTAGACCCTAGATTTGAGTGTCCATACACTAATGAAGCAGCAGCAGCATACCCATTTGTTGATGGCTTCACGGTATCGGAGATTGACTCTTCATACGCCAGGAATGAAGATTATGCACTGTTTCTTGCACAAGAAAGCAACCCATCAATGGAGGATGAAGAGTTTGGCTTTCTGGGGAGTGAAAATCAGAGCCTTGAAGAGATGAACCCTGTCTGCAAAATTGAGGAACAGGCCACAGAAGTTCCAGTAGTCTTCAACATGGGTTTGTGTGGGGAGAAAAAACCTAAGTCCAAGAAGCTTGAAGGGCAGCCCTCCAAGAATCTAATGGCAGAAAGAAGGAGAAGAAAGCGCCTCAATGACCGCCTCTCCATGCTAAGGTCAATAGTTCCTAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGAGACACCATAGATTATATGAAAGAGCTTCTAGAAAGGATCGGTAAACTGCAACAGGAAAGAACGGAAGAGGGTGTAAATCAGATAAACCTCTTGGGTAAATCCAAAGAGATGAAGCCAAATGAAGTGATGGTAAGAAATTCACACAAGTTTGAAGTAGAGAAGAGAGACCAGGACACAAAAGTCAGTATCTGTTGTGGCACAAGGGCTGGATTGTTGCTATCAACAGTGAACACCCTTGAAGCATTAGGCCTTGAGATTCAACAATGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGTAGCCGAGCAGAGAACTGGTATTAGCTCTGAAGAGATAAAGCAAGCACTATTCAGAAATGCCGGTTATGGTGGGAGATGTCCATAG 1008 0.4345 MELTQLGFLEELLTPRRDTWSTFSSGLGEIFPNNDWSFNSFEDNPPLAPLNPPLPPFFTQLDPRFECPYTNEAAAAYPFVDGFTVSEIDSSYARNEDYALFLAQESNPSMEDEEFGFLGSENQSLEEMNPVCKIEEQATEVPVVFNMGLCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQQERTEEGVNQINLLGKSKEMKPNEVMVRNSHKFEVEKRDQDTKVSICCGTRAGLLLSTVNTLEALGLEIQQCVISSFNDFSMQASCSEVAEQRTGISSEEIKQALFRNAGYGGRCP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0954 335 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
Lele51g0954 335 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 99 329 - -
Lele51g0954 335 Gene3D - 154 225 IPR036638 GO:0046983
Lele51g0954 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 225 IPR036638 GO:0046983
Lele51g0954 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Lele51g0954 335 SMART finulus 168 217 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0954 Lele-ChrLele51 6015090 6016349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0954 153 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.132 6.23e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele51g0954 HLH 7.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0940 49 5914335 5915588 Lele51g0954 51 6015090 6016349 hybridization
Lele50g0999 50 6365352 6366636 Lele51g0954 51 6015090 6016349 hybridization