Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0951 ATGTCTCCACCGCTGCTGGTTGCTGACGAGGAAGGATGGAGCAATATTTCAACAGTAGCATCTTCACCGTCATTGGAATCTCTCTCCCATAATGGAACTACATTAAAAGAGCGCAATTACCTCGGAATGTCAGATTGTTCATCATCAGTTGACAGTTCTAGTGTCCCGAGCATGTCAGATGAGAAAAAGGACAACATGAATTTGAAGGCTACAGAGTTGAGGTTGGGTCTTCCTGGATCCCAGTCTCCTGAAAGGGATTCAGATCTTTATGCATCAAACTCAACAAAGCTTGATGAGAAACCACTATTTACTTTACTTCCTACAAGAGATGGAATCTGTTCATCATCCCAGAAAACTGTGGTTTCCGGAAACAAGAGAGGTTTCTCTGACACCATGGAGGGTTTCCCAGAGGGGAATTTTACTGGTAATTCAGGGATAAATGTAATGCTATCTAGATCTTCTGGAGCTCAGCCAACCTTTATGAAAGAAATACCTGCTAAACTTTCAAAGGAACGGCCTTCTGCAACCAATGGACTTAGTCATAATCAGACGGGTACTCCTGCTAATGTCAGTGCGCCAGCTGCTAAAGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATATAGGAAGAATTCATTGGCCAATACTTCAAAGAACAATGATGAAGTTGATGGAAAACCGGGTCCTGCTGCTCTCTTTGTGAAGGTGAGCATGGATGGTGCTCCTTATCTAAGGAAGGTAGATCTAAGGAATTATAAAACATATCAAGAACTGTCTTCTGCCCTCGAGAAGATGTTCAGCTGTTTTACTTTAGGTCAATGTGGTTCTCATGGTGCTCCAGGCAGAGAAATGTTAAGTGAGAGCAAGTTGAGGGATCTTCTACATGGTTCTGAGTACGTTCTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTAGGGGATGTACCATGGGGGATGTTCATTGACACATGCAAGAGGCTCAAAATTATGAAGGGTTCAGATGCCATTGGCTTGGCTCCCAGAGCTATGGAAAAATCCAAGAGCAGGATCTAA 1056 0.4309 MSPPLLVADEEGWSNISTVASSPSLESLSHNGTTLKERNYLGMSDCSSSVDSSSVPSMSDEKKDNMNLKATELRLGLPGSQSPERDSDLYASNSTKLDEKPLFTLLPTRDGICSSSQKTVVSGNKRGFSDTMEGFPEGNFTGNSGINVMLSRSSGAQPTFMKEIPAKLSKERPSATNGLSHNQTGTPANVSAPAAKAQVVGWPPIRSYRKNSLANTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYKTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0951 351 Pfam AUX/IAA family 71 342 IPR033389 -
Lele51g0951 351 MobiDBLite consensus disorder prediction 169 195 - -
Lele51g0951 351 ProSiteProfiles PB1 domain profile. 231 335 IPR000270 GO:0005515
Lele51g0951 351 MobiDBLite consensus disorder prediction 36 61 - -
Lele51g0951 351 MobiDBLite consensus disorder prediction 36 93 - -
Lele51g0951 351 SUPERFAMILY CAD & PB1 domains 229 332 - -
Lele51g0951 351 Gene3D - 228 344 - -
Lele51g0951 351 MobiDBLite consensus disorder prediction 173 191 - -
Lele51g0951 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 338 IPR003311 GO:0005634|GO:0006355
Lele51g0951 351 FunFam Auxin-responsive protein 226 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0951 Lele-ChrLele51 5981934 5985116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0951 235 341 B3 DNA Binding Superfamily AT4G23980 30.841 3.59e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele51g0951 AUX_IAA 1.2e-91 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0951 51 5981934 5985116 Lele51g0951 51 5981934 5985116 ECH
Lele49g0935 49 5883310 5886380 Lele51g0951 51 5981934 5985116 hybridization
Lele50g0994 50 6328817 6331724 Lele51g0951 51 5981934 5985116 hybridization