Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0940 ATGAAAGGGTCACGGTGGCGTAACGTTGTTAACGGTAACAACCGCCACCTGCAGCTGCCAGCTGCCCAGCCTGCCACCCTGTGTGTAACAGAAGACGACGACGTTTGTCACTGTATTGCTCAGGAGGTGTTCGGTGTTCCAGCACCCCTGAGGGATAATTCTTTTATACCTGCATTTACTTCTCCGTTCCTGATCTCATTTCCGCCTCCGATGGCCTCCGACACCTTCTCCGACAAGAATGCTGTCTTCAGAAAACTCAAGGCAAGGTCCGATAACAAGATGTGTTTCGATTGCAATGCAAAGAATCCAAATTGGGCGTCGGTTACATATGGGATCTTCCTCTGCATCGATTGCTCGGCTGTTCATCGCAGCCTCGGTGTGCACGTCAGCTTTGTGAGATCTACGAATTTAGACTCATGGACTCCTGAGCAGCTGAGAATAATGAGCTTTGGAGGAAACAATCGGGGACATGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGAAAAATCGAGGCCAAGTATACATCTAGAGCTGCAGAGTTGTATAGACAACTTCTCTCCAAGGAAGTAGCTAAAAGTATGGCAGAGGAGGCAGGTTTACCATCCTCACCTGTTGCTTCTCAGTCTGCCCAAGTGGCTAATGGACTCCCTGAAGTCAGGACCAATGAACCACCAAAAGAAAACATTTTGGAAAAGCCAGAAATGCCTGAGCGCACTGCTTCCCCTAAAGCTTCTCATATAACAGTTTCCAGTACTGTCAAGAAACCTATTGGTGCCAAAAAAGGTGGCAAGACTGGGGGCCTTGGTGCCCGGAAGCTTACTAAAAAGCCGAGTGAATCTCTATATGAGCAGAAGCCAGAAGAAGCACCTGCTCCCGTTTCTTCCTCATCAAGCAATGCTTTGGCAGCAGGGCCACCCTTGACATCTCGGTTTGAGTATGTTGAAAATGTGCAGTCATCTGAGTTAAATTCAGGAGGAGGTTCACACATACTTGGCCATGTGGCTCCACCAAAGTCATCGAGCTTTTTTGCTGATTTTGGGATGGATAGTGGCTTCCCAAAACGGTCTGGGTCAAATTCCTCAAAAGTGCAAATTCAGGAATCTGATGAAGCAAGGAAGAAGTTCTCAAATGCTAAATCTATATCCTCAGCACAATTTTTTGGAGATCAAAACAAAGCTGCGGATATGGAGAGTCAAGCTACTTTGGCAAAGTTGTCGGGTTCAAGTGCCATCTCTAGTGCAGATCTTTTTGGTCACTCGTCGGATCCCTCCATTGATATCACTGCAAGTGACCTCATCAATCGACTATCTTTCCAGGCACAGCAGGATATCTCTTCTATCAAAAACATTGCCGGAGAGACTGGGAAGAAGCTTAGTTCTTTGGCATCCACTTTGATGACAGATCTTCAGGACAGAATCCTCTAA 1428 0.4671 MKGSRWRNVVNGNNRHLQLPAAQPATLCVTEDDDVCHCIAQEVFGVPAPLRDNSFIPAFTSPFLISFPPPMASDTFSDKNAVFRKLKARSDNKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWTPEQLRIMSFGGNNRGHVFFKQHGWTDGGKIEAKYTSRAAELYRQLLSKEVAKSMAEEAGLPSSPVASQSAQVANGLPEVRTNEPPKENILEKPEMPERTASPKASHITVSSTVKKPIGAKKGGKTGGLGARKLTKKPSESLYEQKPEEAPAPVSSSSSNALAAGPPLTSRFEYVENVQSSELNSGGGSHILGHVAPPKSSSFFADFGMDSGFPKRSGSNSSKVQIQESDEARKKFSNAKSISSAQFFGDQNKAADMESQATLAKLSGSSAISSADLFGHSSDPSIDITASDLINRLSFQAQQDISSIKNIAGETGKKLSSLASTLMTDLQDRIL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0940 475 Pfam Putative GTPase activating protein for Arf 82 180 IPR001164 GO:0005096
Lele51g0940 475 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 71 207 - -
Lele51g0940 475 PRINTS HIV Rev interacting protein signature 92 111 IPR001164 GO:0005096
Lele51g0940 475 PRINTS HIV Rev interacting protein signature 132 153 IPR001164 GO:0005096
Lele51g0940 475 PRINTS HIV Rev interacting protein signature 111 128 IPR001164 GO:0005096
Lele51g0940 475 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 75 475 - -
Lele51g0940 475 MobiDBLite consensus disorder prediction 291 305 - -
Lele51g0940 475 Gene3D Arf GTPase activating protein 70 207 IPR038508 -
Lele51g0940 475 MobiDBLite consensus disorder prediction 200 305 - -
Lele51g0940 475 MobiDBLite consensus disorder prediction 225 240 - -
Lele51g0940 475 SUPERFAMILY ArfGap/RecO-like zinc finger 81 194 IPR037278 -
Lele51g0940 475 MobiDBLite consensus disorder prediction 203 217 - -
Lele51g0940 475 ProSiteProfiles ARF GTPase-activating proteins domain profile. 80 198 IPR001164 GO:0005096
Lele51g0940 475 SMART arf_gap_3 80 196 IPR001164 GO:0005096
Lele51g0940 475 CDD ArfGap_ArfGap2_3_like 78 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0940 Lele-ChrLele51 5869881 5874995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0940 77 153 C2H2 Transcription Factor Family AT3G07940 47.436 1.08e-18 84.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0940 51 5869881 5874995 Lele51g0940 51 5869881 5874995 ECH
Lele49g0923 49 5773368 5778044 Lele51g0940 51 5869881 5874995 hybridization
Lele50g0980 50 6202925 6207649 Lele51g0940 51 5869881 5874995 hybridization