Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0931 ATGGCGGTGCTAACGAAAGCGACAGTATCAGCAGTCCTCCACTCGCTCCTGAGATTTCCGATCTTGGGATCTTTCCGTTGTTCTAATAATAAGTACTCTTCATCTCCCAAACCATTCGATTCGATAAAGCTCAACGTCTCCACCTCCTTTTTTCCCATTTCCTACAGTTGCGTCGTCCCTTCAATTTTCTCCTCCATCGACTCCAGCCCAAGGCTCTGCTTCGAATTATGCTCTGCGCTGCAAGAGGCGGCAACAGAAGAAAAACCACAGCAAACCCACGAAACCAACATAAAAAAGAAGCTCTACGTGTTCAATCTGCCATTTTCGCTCTCGGTGGCCGACATCAAGAACCTCTTTGGTCAATGCGGAACTGTAACCGATGTCGAGATTATAAAAAGCCAAGATGGGAAGAGCAGAGGATTTGCCTTCGTCACTATGGCTTCCGGGGAAGAAGCAGAGGCTGCTATTGATAAATTTGACTCTCATGAATTGTCTGGCAGGATAATGAGGGTTGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTCCACGCCCTATTAAAACTCCCCCTGCTGGTGAAACAAGCCATAAAATTTATGCGTCCAATCTCGCCTGGAAAGCAAGATCTAGCCATCTCAGAGAATTCTTCACAGAGAACTTCAAATCACCAGTTTCAGCCAGGGTTGTGTTTGACAGCCCTAATGGAAGATCTGCTGGGTATGGATTTGTTTCTTTTGCTACAAGGGATGAAGCAGAGGCCGCCATTTCTACTCTGGATGGGAAGGAATTAATGGGGCGACCACTTCGCCTAAAATTCAGTGAAAGGGCTGTTAAAGAATCTGGGGATGAGAAAGGGGAAGAGCAAGGTTCTGATGATGAACGGGCAGAACAAGGCTCCGTGGACTCCAATGTAGGAGCAGGATTTTGA 927 0.4682 MAVLTKATVSAVLHSLLRFPILGSFRCSNNKYSSSPKPFDSIKLNVSTSFFPISYSCVVPSIFSSIDSSPRLCFELCSALQEAATEEKPQQTHETNIKKKLYVFNLPFSLSVADIKNLFGQCGTVTDVEIIKSQDGKSRGFAFVTMASGEEAEAAIDKFDSHELSGRIMRVELAKRFKKPPPPRPIKTPPAGETSHKIYASNLAWKARSSHLREFFTENFKSPVSARVVFDSPNGRSAGYGFVSFATRDEAEAAISTLDGKELMGRPLRLKFSERAVKESGDEKGEEQGSDDERAEQGSVDSNVGAGF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0931 308 SUPERFAMILY RNA-binding domain, RBD 179 275 IPR035979 GO:0003676
Lele51g0931 308 SUPERFAMILY RNA-binding domain, RBD 89 184 IPR035979 GO:0003676
Lele51g0931 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 176 IPR000504 GO:0003723
Lele51g0931 308 MobiDBLite consensus disorder prediction 273 308 - -
Lele51g0931 308 Gene3D - 77 185 IPR012677 -
Lele51g0931 308 Gene3D - 186 307 IPR012677 -
Lele51g0931 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 275 IPR000504 GO:0003723
Lele51g0931 308 PANTHER OS02G0815200 PROTEIN 79 275 - -
Lele51g0931 308 MobiDBLite consensus disorder prediction 273 298 - -
Lele51g0931 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 269 IPR000504 GO:0003723
Lele51g0931 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 168 IPR000504 GO:0003723
Lele51g0931 308 SMART rrm1_1 100 172 IPR000504 GO:0003723
Lele51g0931 308 SMART rrm1_1 197 271 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0931 Lele-ChrLele51 5809026 5812307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0931 101 283 Eukaryotic Initiation Factors Gene Family AT4G34110 26.131 1.81e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0931 51 5809026 5812307 Lele51g0931 51 5809026 5812307 ECH
Lele49g0915 49 5715514 5717926 Lele51g0931 51 5809026 5812307 hybridization
Lele50g0970 50 6138787 6141524 Lele51g0931 51 5809026 5812307 hybridization