Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0918 ATGAGGGGTGTAGGGGAGCAGGAAATGTCAGAGGAACAGCTTAGTGTAAACGATCAATTGCAAGCAGATGAGATCACTGTTGGTCCTTATGGCATGAAACATGTTGGTGATGAGCTTGCAGTCTCAGGAGCCGTGTCCCTAGGTTTTGATATTCCTCCATTAGAAGTTACAACAATGAGAAACATCATGAGAAATTCCTTAAAGAAATTCATGAATGTTGCATTTGCTGCAACGTATATGCGGGTAGCAAGTGCTCAATGATGTGGAGTTGAGCCGGCTTTGCTCCACAGCAAAACGCTATCCTTCAAACAACGGTTATTTAGATTGTATTATGCTGCTTCTTCGGCAGTGATGTTGAAAGACCACGTGTTTGATGAAAGTCCTAGAGTAGATAATGCCAATGTAATGGTCGATTTTGAAAGAAATAGTACGAGAGTTTCTATTCTTCAAAGAAAGAGCGGTTTATTTCCTATAGTGGTCTGGGGGATTAAAACCTCAAATTGGGAGACTGAACTTGCAAGAGATAAAATGTTCTGGAAAGCTGTAATGCGGTATGGATTTTCTCATTCAATCACTTCCTTTAAAATTATTATTCACATATATGCATTGGAAGGAATGCGTATGGAAGCATGCTCTTTGCTCAAAGATGTTGTTGGATTCTATAGGAAAGCCATGTTCGACACATTCAAATTGTTTTCAACTTTGTTGGATTCACCTCGGCATGTGGAACGATCAATTGTGAAATTGATGAAGCTTTGCAAGTCTGGCAAGAAACGCGGAGCTCAGGATGTTTGTAGCTACAGTATTTTAATCCATGCATTTTGTGAAAACGGGGATATAAAGAAAGCGGATGGAACCTTCAATGTTGTGTTCCGGAATATCGGTGCTTCTGGATACAAACATGATCAGGCTGCTTATGAAACTTTGATCAATAGATTTTGCCGTCAAGGTGATATGGATTCAGCCAAAAAGCTTTTGGAGGAGATGATTACAAATGATCTGGCTCCTACCTCTTTTGGTTTCCAGAGCATAATTGGAGGATTCTACAAACTGGGAGACTTAGACATGGCATTGGAAGTTCTAAATTCCATGCTACAATGTGTCGCTCCCAACACCCTCACTTATACGGTCCTTATTAACATCTTTTGCCGTGTGGGCAAAATGCGTGAAGCATTTGGTTTTTACAAGGAAATGATAAAAGATGGTTTGAATCCAGATCAGATTTCATATACTTCTTTAATGGCTGGGTTTTATGAGGCACATAGGTTATATCGTGAAATGAGGGTAAAGGGTATTTCACCAGAAGATATAACTCTCATGACTGTCTTGCACAGGCATGACCGCAGCCAATTACAGAATTTGGATTCATGTCCTGGTCCTGGTGCTGAAATGGAAAGCAAGCTTTATCTCTCAATGGGGGTCTTATCATCAGCCTGGACCACTATGAACTTGGACCACAACAATGACACAACACTAGTGAGGGCAATGTTCACTATAAGTAAAGCTTGGGATTTCCCATTTGCTGCTCAAAGACGCCATTGGGACTCATTGTCATCCCTTCCTACTTCCCTTGAATTTAGCCTGAGAATTATTTACTCTGGCGAGAAGCAGATGCAACTTGGAACCTTACAAGACCATATGCTTGCAGATTCTGATGTCATAATGGTGTTGTAA 1674 0.4074 MRGVGEQEMSEEQLSVNDQLQADEITVGPYGMKHVGDELAVSGAVSLGFDIPPLEVTTMRNIMRNSLKKFMNVAFAATYMRVASAQXCGVEPALLHSKTLSFKQRLFRLYYAASSAVMLKDHVFDESPRVDNANVMVDFERNSTRVSILQRKSGLFPIVVWGIKTSNWETELARDKMFWKAVMRYGFSHSITSFKIIIHIYALEGMRMEACSLLKDVVGFYRKAMFDTFKLFSTLLDSPRHVERSIVKLMKLCKSGKKRGAQDVCSYSILIHAFCENGDIKKADGTFNVVFRNIGASGYKHDQAAYETLINRFCRQGDMDSAKKLLEEMITNDLAPTSFGFQSIIGGFYKLGDLDMALEVLNSMLQCVAPNTLTYTVLINIFCRVGKMREAFGFYKEMIKDGLNPDQISYTSLMAGFYEAHRLYREMRVKGISPEDITLMTVLHRHDRSQLQNLDSCPGPGAEMESKLYLSMGVLSSAWTTMNLDHNNDTTLVRAMFTISKAWDFPFAAQRRHWDSLSSLPTSLEFSLRIIYSGEKQMQLGTLQDHMLADSDVIMVL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0918 557 Pfam PPR repeat 343 366 IPR002885 -
Lele51g0918 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Lele51g0918 557 Pfam PPR repeat 263 283 IPR002885 -
Lele51g0918 557 Pfam PPR repeat 298 329 IPR002885 -
Lele51g0918 557 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 159 448 - -
Lele51g0918 557 Gene3D Tetratricopeptide repeat domain 327 457 IPR011990 GO:0005515
Lele51g0918 557 TIGRFAM PPR: pentatricopeptide repeat domain 374 406 IPR002885 -
Lele51g0918 557 TIGRFAM PPR: pentatricopeptide repeat domain 266 288 IPR002885 -
Lele51g0918 557 TIGRFAM PPR: pentatricopeptide repeat domain 305 337 IPR002885 -
Lele51g0918 557 Pfam PPR repeat family 370 417 IPR002885 -
Lele51g0918 557 Gene3D Tetratricopeptide repeat domain 225 326 IPR011990 GO:0005515
Lele51g0918 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0918 Lele-ChrLele51 5706744 5714412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0918 263 449 Glycosyltransferase AT1G05670 34.021 9.23e-29 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0918 51 5706744 5714412 Lele51g0918 51 5706744 5714412 ECH
Lele50g0950 50 6005865 6008090 Lele51g0918 51 5706744 5714412 hybridization