LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g0892	ATGAAACCTGAATCAGTTTTGGAGGATATATATGGTCTGTGCCAAATGAATATGACCGTTTTTGAATTAATTGAAAATGAGAATTCTGTGTTCCATGGATGGAAAACTACTCTCATAGATTCTTCATTTGGATGTTCAATTTCTTACTCCGAATTGTTTGCTTTGGTCAAATCCATGGTATCTGGTCCCAACAAAATGGGCGTTTCACAAGTTGACGTTGCCCTACTTCTAATTCCTAATTCCATTTACTATCCCCTTGTTTTCTTGGGTGTTCTGTATCTTGGCGCAATTGTCTCACCGTTGAATCCTCTAAGTCGAATCTCAGAAATCCATAAGCAAATTGCTGAATGTGGTGTGAGTCTGGCTTTTACTTTACGTGAAAAAGTTAGAGAGCTGCAGCCATTGGGCACTCAAGTTATTGGAGTTCCCGAAAATTTCAAGGACTTGAAATTCTCTGATTACTCAGTTTTTTATAACCTTGTTTCTGGTAACTCGGGTTTGTTTCCGAGGCCGGTTATTAAACAAGAAGACAAGGCGGCTATACTGTATCCTTCTGGGACTACGGGTGTGAGCAAAGGAGTTGTTCTAACACATAAGAATTTTGTTTCTATAGTTGAGCTTTTCGTGAGGTTTGAAGCTTCTCAATATGAATATTCAAGCTCGAAGAATGTGTTCGTTTCTTTTCTGCCAATGTTCCATATATATGGTTTATCACTCTTTGCAACAGGATTACTGTCATTAGGCTCTACGATTATTGTAATGAAAACATTTAACATCAATGAAGTCATTAAGGTGATTGATAATTACAGAGTCACACACTTCCCCGTTGTTCCATCAACATTGACGGCATTGACAAAAAGGATAACCGGTAAAAAGCACTTTTCACATTTACATCTTGAACCAATGGCTTGGGCCCTCACCTCTCTCGCCGATCCCATGGCGACCTCTATGGTCATATCCCACAATTTATCTCTTTCTTCCATCATCAACCCTGGTTATCCAAAATATCCTGTTAAGTCGCGAATTGTTGCTCTCAATGGCGTTCGAAGCTCACAAAGTCATTCCATTTTGCAAAGCTCAGTCGTACCCATCGGAGGTTCTGGATTCAATTCCAGGTTTTTGCGTACGAGTACTCAAGAGAATTGCAGAAGTCGAGAAGTTCTGACGAAATCGGCTGAAACTGACAGTGGAAAAACTTCCACAATTGGCCAAAATGTGTTTGGGCTATTGCATTTGGTTGTCTCCTTGGGACTTATTCTTGCGATGGACAATTATCTTAAGAAAGCCTTCGTGGCTGCTGCGATTAAATTCCCTAGTGCACTGTTTGGGATGTTTTGTATATTCTCAGTTTTGGTTATTCTTGATTCCACTGTTCCATCTGCAGCCACAGCCTTGATGAACTTCTTCGAACCGGCGCTTTTGTTCATTCAGAGATGGCTCCCCTTGTTCTATGTTCCATCTTTGGTTATCTTGCCCCTTTCTGTTAAAGATATTCCAGCTGCTTCGGGCATCAAGATTAGCCTTATCATAGTTGGAGGTTGGCTAGCTACACTATTGGTTGCTGGTTTCACAGCTATAGCAGTAAGAAAAGCTGTGAAGACAGAAATGATTGATGCCGAGCCTATGAAAAAACCCTCTCCATTTTCTGCCCTTGAAGTGTGCGCTTGGACTGGGATTCTCCTTGTCTCATTTGTGTCTGCAATATTTTATCCAACTGCACTTGGGACAAATGCCAGAACCTCTCTTCCTTTCTTACTTGCGTCCACAGTGTTAGGCTACATGGTCGGTTCTGGGTTGCCATCAGATGTGAGGAAAGTATTTCATCCAATCATTTGCTGTGCGCTTTCAGCAGATCTGACAGCTTTGGCTTTTGGATATGTTTCGAAGTTGGGGTTTGAACCTGTTCTAGGATATTACCTTACAAAGGTATCCTCTAACCCTGGAGCTGGTGACATTTTAATGGGATTTTTGGGATCCGTCATTCTCTCTTTTGCCTTCTCTATGTTCAAACAAAGAAAGCTTGTAAAAAGGCATGCAGCTGAGATTTTCACCTCTGTCATAGTCTCAACCGTATTCTCATTGTACTCAACTGCTCTTGTCGGACGTCTCGTGGGATTAGAGCAATCTTTAACGGTTTCCATTCTACCCAGATGTATAACTGTTGCATTGGCCCTTAGCATTGTGTCTTTATTTGAAGGTACCAATTCATCTCTGACCGCAGCTGTGGTTGTAGTAACTGGTCTGGTTGGAGCAAATTTTGTGCAAGCAACGCTTGACAAATTTCGCTTTCGCGATCCAATTGCTCGAGGAATTGCAACCGCATCTAGTGCTCATGGACTTGGAACAGCAGCACTGTCCGCAAAGGAACCTGAGGCTCTGCCATTTTGTGCGATTGCTTATGGTCTGAATGGTATCTTTGGATCTATTCTTTGCTCCATCCCTCTTGTTAGACAAAGCTTGCTTGCTGTTGTTGGCTGA	2478	0.4193	MKPESVLEDIYGLCQMNMTVFELIENENSVFHGWKTTLIDSSFGCSISYSELFALVKSMVSGPNKMGVSQVDVALLLIPNSIYYPLVFLGVLYLGAIVSPLNPLSRISEIHKQIAECGVSLAFTLREKVRELQPLGTQVIGVPENFKDLKFSDYSVFYNLVSGNSGLFPRPVIKQEDKAAILYPSGTTGVSKGVVLTHKNFVSIVELFVRFEASQYEYSSSKNVFVSFLPMFHIYGLSLFATGLLSLGSTIIVMKTFNINEVIKVIDNYRVTHFPVVPSTLTALTKRITGKKHFSHLHLEPMAWALTSLADPMATSMVISHNLSLSSIINPGYPKYPVKSRIVALNGVRSSQSHSILQSSVVPIGGSGFNSRFLRTSTQENCRSREVLTKSAETDSGKTSTIGQNVFGLLHLVVSLGLILAMDNYLKKAFVAAAIKFPSALFGMFCIFSVLVILDSTVPSAATALMNFFEPALLFIQRWLPLFYVPSLVILPLSVKDIPAASGIKISLIIVGGWLATLLVAGFTAIAVRKAVKTEMIDAEPMKKPSPFSALEVCAWTGILLVSFVSAIFYPTALGTNARTSLPFLLASTVLGYMVGSGLPSDVRKVFHPIICCALSADLTALAFGYVSKLGFEPVLGYYLTKVSSNPGAGDILMGFLGSVILSFAFSMFKQRKLVKRHAAEIFTSVIVSTVFSLYSTALVGRLVGLEQSLTVSILPRCITVALALSIVSLFEGTNSSLTAAVVVVTGLVGANFVQATLDKFRFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYGLNGIFGSILCSIPLVRQSLLAVVG	825

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g0892	825	PANTHER	PUTATIVE SEROTONIN TRANSPORTER	380	822	IPR007300	-
	Lele51g0892	825	Pfam	AMP-binding enzyme	35	291	IPR000873	-
	Lele51g0892	825	Gene3D	-	46	298	-	-
	Lele51g0892	825	Pfam	LrgB-like family	589	813	IPR007300	-
	Lele51g0892	825	Gene3D	-	49	197	-	-
	Lele51g0892	825	SUPERFAMILY	Acetyl-CoA synthetase-like	32	296	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g0892	Lele-ChrLele51	5480628	5486503	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g0892	32	290	Monolignol Biosynthesis Gene Families	AT4G19010	53.053	2.25e-82	273

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele49g0875	49	5402647	5407495	Lele51g0892	51	5480628	5486503	hybridization
	Lele50g0912	50	5750319	5756092	Lele51g0892	51	5480628	5486503	hybridization