Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0878 ATGTTTACGTGCATAGCATGTACGAAGCAAACGACGGATGACAGGGAAGATGAAGAAGGTGGACGTGACAGTGGCACGCCCAGTACGAAAGAGGCCGTCAAAGGCCTGACGGCGCAGTTGAAAGATATATTCATTAAGCAATGCAAACCCTGCACAGGGTCCCCTAGCTACAAGAAAGGGCAGAGACATTTTCCAGACTTTGATGCTATATCTGAAGGGGTTCCATACCCTTACATTGGAGGGGCTAGTTCCAGTTCAACCCCTGCTTGGGACTTTACAAGCTCCCGTTACCCAGACGGTCGATCTGACCCAAGATTTGGTGGGGCTGCACGTGACTCAACAGTATCAGTACAATCATGTGATGTAGTTTTAGAGGAGGAGGACGAACCCAAGGAGTGGATGGCTCAGGTGGAACCGGGTGTTCACATCACATTTGTGTCTCTTCCCAATGGAGGGAATGATCTCAAAAGAATTCGCTTCAGCCGAGAGATGTTCAATAAATGGCAAGCTCAGAGATGGTGGGGTGAGAATTACGACAGGATCATGGAACTGTATAACGTGCAAAGATTCAATCGACAAGCTTTTCAAACTCCCTCGAGGGCTGATGATGAGCCAAGAGATTCTTCATATACAAGACTAGGATCTGCACGAGAGAGCAAGGAATGGACACCAAGGCATCACTATAGACCCTCGGGATACAGAGGAGGACACTACCCTTCTGACCATTTTGATCAGGCGGGCTCATCCATGGAACCACCCCGCCCAACCACTGATTCTGTAAATGAACCTTCTGTCAGTAATGCCGGTGACATGGAAGCAGAGTGGATTGAGGAAGATGAGCCTGGCGTCTACATTACTATCCGACAATTAGCTGATGGTACCAGGGAGCTCCGACGTGTCAGATTCAGTCGGGAAAGATTTGGAGAAGTAAATGCGAAGACATGGTGGGAGGAGAACAGGGAGAGAATACAAGAACAGTACCTTTGA 987 0.4863 MFTCIACTKQTTDDREDEEGGRDSGTPSTKEAVKGLTAQLKDIFIKQCKPCTGSPSYKKGQRHFPDFDAISEGVPYPYIGGASSSSTPAWDFTSSRYPDGRSDPRFGGAARDSTVSVQSCDVVLEEEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQAFQTPSRADDEPRDSSYTRLGSARESKEWTPRHHYRPSGYRGGHYPSDHFDQAGSSMEPPRPTTDSVNEPSVSNAGDMEAEWIEEDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQEQYL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0878 328 MobiDBLite consensus disorder prediction 10 25 - -
Lele51g0878 328 Pfam Transcription factor regulating root and shoot growth via Pin3 131 185 IPR013591 -
Lele51g0878 328 Pfam Transcription factor regulating root and shoot growth via Pin3 272 327 IPR013591 -
Lele51g0878 328 MobiDBLite consensus disorder prediction 85 112 - -
Lele51g0878 328 MobiDBLite consensus disorder prediction 196 266 - -
Lele51g0878 328 MobiDBLite consensus disorder prediction 250 266 - -
Lele51g0878 328 MobiDBLite consensus disorder prediction 8 33 - -
Lele51g0878 328 ProSiteProfiles BRX domain profile. 131 186 IPR013591 -
Lele51g0878 328 ProSiteProfiles BRX domain profile. 273 328 IPR013591 -
Lele51g0878 328 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 328 IPR044532 -
Lele51g0878 328 MobiDBLite consensus disorder prediction 199 228 - -
Lele51g0878 328 Pfam Transcription factor BRX N-terminal domain 26 51 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0878 Lele-ChrLele51 5393855 5397930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0878 1 328 Major Intrinsic Protein MIP AT1G31880 65.517 7.45e-153 431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0862 49 5334313 5338533 Lele51g0878 51 5393855 5397930 hybridization
Lele50g0895 50 5635672 5640609 Lele51g0878 51 5393855 5397930 hybridization