Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0873 ATGGCTGCAAATCTCACCGGTGGGGCGATAATGACGATGTGTAGGGACGATTTCTCTTGCGATGACCTGAAGCCTGTGCTTCAAGTGATTGACTTGAAGTTGGTGCAGTCGCAGCAGAATAACAACACGGAGAGGTATAGGGTTGTGCTTTCAGATGGTTCTCATTACCAGCAAGGGATGCTTGCTACTCAGAAGAACGAGTTGGTCCATGCTGGGCGATTGCAGAAGGGCTCTGTTGTTAAGCTCACTCAGTTTATCTGTAATGTTGTCCAGAGTCGCAATTATGATTTTGAATGGCGATTGGTCTCCTTGATTTCTGTTTCGATTGTTGATGATGTGGTTGTCTCATTCACCATGAACAGAATTATCATCATTATCGAGCTGGATATGGTCCTTGACAGATGTGATATGATTGGAGAACCTGTCCCGGCACCAAGAGCTGTAGCTGCATCATCTTCCACTGGTCAGTCTGGAGCTAACCCTATTATTCGTCCACAAATCAATTATACTGCCAGTAGTGCAAGGCATGGTGCTGCAAATGTCCCTCCTATATTGCCTCAAGCAGAGCCTAGAGCTACACCTACTTTACCTATTCCAAGAACCCCACAAAATGTCTATATTCGTCCACCACAGCCTATGCATAGACAATCTTCTCCAATTTACAATAACAGGGGACCAATGGCCAGAAATGAAACTTTACCAAGGATAATTCCAATAGCTGCATTGAATCCATACGTAAGCATGTGGACAATTAAGGCTAGAGTTACAGCAAAGGCAAGCCTTAGGCAGTACAACAATGCCAGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTTGATTCCGATGGTGGAGAAATTCGTGCAACTTGCTTTAATGCGGTGGCTGAACAGTTCTATCATCAAATTGAAATTGGTAAAGTATATATGATTTCCAGGGGGAGTATAAAGCCAGCCCAAAAAAATTTCAATCACCTTCCTAATGATCAAGAATTGACCCTTGATGTTACATCCATCATACAGCCATGCAATGATGATGAGGCAATTCCAATGCGTCTTTTTAATTTTCGCCCTATTAGTGATGTTGAAAGCATCGAAAGTTCGAGTATTGTGGATGTGATTGGTGTGGTATTTTCTGTTAGTCCTACAACTTCAATCATGAGAAAGAATGGTACTGAAACTCTGAAGAGAGCCCTCCAGTTGAAGGACATGTCTGGTTGTAGTGTTGAACTAACCCTATGGGGAGATTTTTGTAATGCAGAAGGACAACGGTTGCAGAATACTTCTGACTCAGGCTCATTTCCAGTTTTGGCTGTGAAAGCTGCCAGGGTAAATGAATTCAATGGGAAGGCCCTTGGGACCATAGCCAATAGTCAGCTATTTATAGAGCCTGATTTTCCTGAGGCTTACAGGTTAAAAGAATGGTTTAACAAGGAAGGGAGGAATGTTCCAGCTATTTCTATTTCCAGAGAATCATTCAATGTTGGTAAGACTGATATGAGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCTGAGAAGCCTGATTGGATTAGCATCTGTGCAAGTGTTTCATTCATTAAGGTCGATTCTTTCTGCTATACAGCCTGTCCCATCATGATAGGGGATAGGAAATGTAGCAAAAAAGTGTCCAATAATGGAGATGGAAAATGGCGGTGTGATAGATGTGACCAGAATGTTGATGCTTGTGAATACAGGTATATACTGCAACTCCAAATACAGGACCACACTGGGCTAACATGGGTAACTGCATTTCAGGAGTGTGGTGAGGAGATAATGGGCTTACCTGCTAAAGATCTTTATTATATGAAATATGAAGAGCAGGATGATGAAAGATTTGCACAAGTCATCCGTAAGGTTCTTTTTACTAAGTACATATTCAAGTTAAAAGTTAAGGAAGAGACATTTGGTGATGAACAGCGGGTGAAGTCAACAGTAGTGAGAGCAGAGAAGGTGGACTTTTCATCTGAATCAAGATTTCTTTTGGATTTGATTGATAAGCTTAAAGCTGAGAAGGTAGAAGGTATCAATCCTAACTCTGTAATCAGTAATGCTGGACCGCAGAATGTTGGAACTGGCCTGGCTGGGCAACCAGCTTATAATCCCATAACAAGCAACACTGGTGTGAGTAGAGAATATTGGACGCAAGCAAATAATGTGGGTCAGTATGAACCCCAACATAGGAGTTCTTTTGCTTCAGCTGGGTCTTCTAGTTCATTTATGCCTTGCAGCAATTGTGGCGGCTCTGGCCATAGCTCTATGCATTGCCCAAACATTACAAGTCTACCTCGACAGTCCATGGGAGGAGGGTCCTATGGAAATAAGGCATCTTCAGGGGTAGGTGGTGGTGTTGCCACTGGTGAATGCTTTAAATGTCATCAAACTGGTCACTGGGCAAGAGACTGTCCAGGTTTCAATGCAGCACCCCCTTCTGCTTATGGAAGTAGTGTTGTTCATGGAGGGCATGGGTTTGTTCAAAGGCAACAGCTTGGCGGATTTTGA 2529 0.427 MAANLTGGAIMTMCRDDFSCDDLKPVLQVIDLKLVQSQQNNNTERYRVVLSDGSHYQQGMLATQKNELVHAGRLQKGSVVKLTQFICNVVQSRNYDFEWRLVSLISVSIVDDVVVSFTMNRIIIIIELDMVLDRCDMIGEPVPAPRAVAASSSTGQSGANPIIRPQINYTASSARHGAANVPPILPQAEPRATPTLPIPRTPQNVYIRPPQPMHRQSSPIYNNRGPMARNETLPRIIPIAALNPYVSMWTIKARVTAKASLRQYNNARGDGKVFSFDLLDSDGGEIRATCFNAVAEQFYHQIEIGKVYMISRGSIKPAQKNFNHLPNDQELTLDVTSIIQPCNDDEAIPMRLFNFRPISDVESIESSSIVDVIGVVFSVSPTTSIMRKNGTETLKRALQLKDMSGCSVELTLWGDFCNAEGQRLQNTSDSGSFPVLAVKAARVNEFNGKALGTIANSQLFIEPDFPEAYRLKEWFNKEGRNVPAISISRESFNVGKTDMRKTISQIKDEKLGTSEKPDWISICASVSFIKVDSFCYTACPIMIGDRKCSKKVSNNGDGKWRCDRCDQNVDACEYRYILQLQIQDHTGLTWVTAFQECGEEIMGLPAKDLYYMKYEEQDDERFAQVIRKVLFTKYIFKLKVKEETFGDEQRVKSTVVRAEKVDFSSESRFLLDLIDKLKAEKVEGINPNSVISNAGPQNVGTGLAGQPAYNPITSNTGVSREYWTQANNVGQYEPQHRSSFASAGSSSSFMPCSNCGGSGHSSMHCPNITSLPRQSMGGGSYGNKASSGVGGGVATGECFKCHQTGHWARDCPGFNAAPPSAYGSSVVHGGHGFVQRQQLGGF 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0873 842 Gene3D - 235 345 IPR012340 -
Lele51g0873 842 FunFam Replication protein A subunit 235 344 - -
Lele51g0873 842 SUPERFAMILY Nucleic acid-binding proteins 500 677 IPR012340 -
Lele51g0873 842 CDD RPA1N 8 131 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele51g0873 842 Pfam OB-fold nucleic acid binding domain 249 338 IPR004365 GO:0003676
Lele51g0873 842 Pfam Replication factor-A C terminal domain 519 670 IPR013955 -
Lele51g0873 842 ProSiteProfiles Zinc finger CCHC-type profile. 798 812 IPR001878 GO:0003676|GO:0008270
Lele51g0873 842 FunFam Replication protein A subunit 486 677 - -
Lele51g0873 842 Gene3D - 347 485 IPR012340 -
Lele51g0873 842 MobiDBLite consensus disorder prediction 185 223 - -
Lele51g0873 842 SUPERFAMILY Nucleic acid-binding proteins 353 482 IPR012340 -
Lele51g0873 842 CDD RPA1_DBD_A 238 340 - -
Lele51g0873 842 PANTHER REPLICATION FACTOR A 1, RFA1 249 655 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele51g0873 842 FunFam Replication protein A subunit 347 485 - -
Lele51g0873 842 SUPERFAMILY Retrovirus zinc finger-like domains 784 816 IPR036875 GO:0003676|GO:0008270
Lele51g0873 842 SUPERFAMILY Nucleic acid-binding proteins 236 348 IPR012340 -
Lele51g0873 842 Gene3D - 486 677 IPR012340 -
Lele51g0873 842 SUPERFAMILY Nucleic acid-binding proteins 1 92 IPR012340 -
Lele51g0873 842 SMART c2hcfinal6 797 813 IPR001878 GO:0003676|GO:0008270
Lele51g0873 842 SMART c2hcfinal6 751 767 IPR001878 GO:0003676|GO:0008270
Lele51g0873 842 Gene3D - 745 827 - -
Lele51g0873 842 CDD RPA1_DBD_B 369 476 - -
Lele51g0873 842 ProSiteProfiles Zinc finger CCHC-type profile. 752 767 IPR001878 GO:0003676|GO:0008270
Lele51g0873 842 Pfam Zinc knuckle 797 812 IPR001878 GO:0003676|GO:0008270
Lele51g0873 842 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 676 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele51g0873 842 CDD RPA1_DBD_C 503 676 IPR013955 -
Lele51g0873 842 FunFam Replication protein A subunit 4 145 - -
Lele51g0873 842 Pfam Replication protein A OB domain 358 461 IPR031657 -
Lele51g0873 842 Pfam Replication factor-A protein 1, N-terminal domain 5 93 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele51g0873 842 Gene3D - 3 144 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0873 Lele-ChrLele51 5357114 5360424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0873 1 782 Core DNA Replication Machinery Family AT5G45400 48.633 0.0 803
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0873 51 5357114 5360424 Lele51g0873 51 5357114 5360424 ECH
Lele49g0856 49 5295950 5299290 Lele51g0873 51 5357114 5360424 hybridization
Lele50g0890 50 5596328 5597306 Lele51g0873 51 5357114 5360424 hybridization