Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0850 ATGGGATCCAGTGGTAGTAAAGCCGTTGCTTCTTGCAATTCGTCGTCGACGTCGTCGTCTTCGGGCAGTTTTCGTAAAGTTCGATCTAGAGGGCATAGAGGTTTTCAGTCTTATTGTTTAGGAACACCTTCTGGATCTCATGACAATGACAATGACAATGACGACCAGGTGTGTGATCAGAGTAAAGAAAACGATAGTAATGTTACATACTCCAATGATGAAGAAACAGATGCAGATGAGATGATATCGGAGTCTTTCAGAAAGATTAAATCTGATAAAATGCCATGTATACCTCCTAATGTCCACCTCGATGAGTGGAGTCAAACAAGCATTTCCAATACTGCATCTAGAAATGGTAGCAGTTCTGATCGTCCAGCTTCAACTCAGTCTTTGAACCCTTCAAGTCGATTCCTTTCTCGGTTTAGCCTTAGTCCCGGTAACGTAAGCTTCAGACTAAGCAGAACCACAAGTTTGGGGTCATCACGGCCTTGCCCTGTTTCTCCTGCAGGCCTCCCAATATTTAACAATGAAGATGACCTTAATCCACAGCCTGGGGCTGCCGGCAGCTTCGCTAATCAACATGAAGCTCTACAATGCAGTGACTTGCTTCCTTCATCACATTGCTATGAAGACGCTTCTATTAATTTAAGGTCTAGTGTCCCTTCATCAGATTCCTATGGCAACTTGCAAAACAATTCAACAAATTCTTCTATGCAGACTATGATTAGAGATGAAAATGGTGCGAGACAAGGGTTAAATATTAACTTATTTTCTTCAAGAATTCACGCCAGAACAGAAAACGTTGAGATGAGACCTAATGATCGCCGAAATGGAGCTCGAGAACATGTTGAACGGAATGTTCGCTTTAGTCGTACTTTGAGTGTTGGAAGGCTCCGTGATAGGGTTCTTCGCCGATCAACAATATCAGAGTTCACCTTTTGCCCACTGCAACAAGAAAGGGATGCAACAGATGCTAGTCAAGCTATTGGAAGACAAGCAGGGGAGAGAGAGTCAAGAGTGCTACCATCTGACGGTGACTCTACAAGTTCCCCTTCTACATCTGGATATCCTCCATCCAATATGTCTAGCTCCTTGTTTGGCATCCAAGACTATGAGGTCGAGTCTTCACGATCAAGAGAAGCTAGGTACCGTGATCTACTGGAGAACAGATCCAATTTCCTAGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAACGATTGGGCAGCCGATTTGAAAACCTGTCTGGGCATGATAGGTCATGTATTTTATCTGGCCAACATAGAAATGGTCGTTGTACATGCCGAATTAGTAATCGTGATGCCCATTCAAATGATGATACTGGGGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCCGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTTTATCTTCCCGCCCTTCTGTTTCTTCTATCGGATCTGTTCCTGCACCTTATGAAGTTGTAGAATCCTTGCCTGTCAAACCATACACAAAGTTGCATAAACATCAAGAGGACGCCGCTCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTACTACCTTGTCATCATGAATTTCATTTAACATGCATAGACAAGTGGCTAAAGGAGATTCACAGGGTATGCCCACTATGCCGTGGGGACATCTGCAATGCTGATTCGATACCAACCGAGAACTGA 1728 0.4387 MGSSGSKAVASCNSSSTSSSSGSFRKVRSRGHRGFQSYCLGTPSGSHDNDNDNDDQVCDQSKENDSNVTYSNDEETDADEMISESFRKIKSDKMPCIPPNVHLDEWSQTSISNTASRNGSSSDRPASTQSLNPSSRFLSRFSLSPGNVSFRLSRTTSLGSSRPCPVSPAGLPIFNNEDDLNPQPGAAGSFANQHEALQCSDLLPSSHCYEDASINLRSSVPSSDSYGNLQNNSTNSSMQTMIRDENGARQGLNINLFSSRIHARTENVEMRPNDRRNGAREHVERNVRFSRTLSVGRLRDRVLRRSTISEFTFCPLQQERDATDASQAIGRQAGERESRVLPSDGDSTSSPSTSGYPPSNMSSSLFGIQDYEVESSRSREARYRDLLENRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISNRDAHSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPYEVVESLPVKPYTKLHKHQEDAAQCYICLVEYEDGDSMRVLPCHHEFHLTCIDKWLKEIHRVCPLCRGDICNADSIPTEN 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0850 575 MobiDBLite consensus disorder prediction 321 364 - -
Lele51g0850 575 CDD mRING-H2-C3H2C2D_ZSWM2 519 562 - -
Lele51g0850 575 SMART ring_2 520 561 IPR001841 -
Lele51g0850 575 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 574 - -
Lele51g0850 575 MobiDBLite consensus disorder prediction 343 364 - -
Lele51g0850 575 MobiDBLite consensus disorder prediction 1 25 - -
Lele51g0850 575 ProSiteProfiles Zinc finger RING-type profile. 520 562 IPR001841 -
Lele51g0850 575 MobiDBLite consensus disorder prediction 1 79 - -
Lele51g0850 575 Pfam Ring finger domain 519 562 IPR001841 -
Lele51g0850 575 MobiDBLite consensus disorder prediction 111 133 - -
Lele51g0850 575 FunFam Putative RING zinc finger domain superfamily protein 489 567 - -
Lele51g0850 575 SUPERFAMILY RING/U-box 498 567 - -
Lele51g0850 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 567 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0850 Lele-ChrLele51 5206050 5209828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0850 47 569 C3H Transcription Factor Family AT5G45290 45.656 1.20e-112 345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0850 51 5206050 5209828 Lele51g0850 51 5206050 5209828 ECH
Lele49g0829 49 5134596 5138286 Lele51g0850 51 5206050 5209828 hybridization
Lele50g0862 50 5424363 5428308 Lele51g0850 51 5206050 5209828 hybridization