Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0778 ATGTTCATAGAAGAACCCTTTGAGCCTGATGAGAATGCGAACAATGATAATTTATTTACTGAAGGGGAAAAATGTGGAATTTGCATGGATATTGTCGTTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGTTTTGCTTGCATTGACAACTGGGCTTCTATCACAAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACATGTGTTCCGGTATATGATACCATTGGAAGCAATAAAATCGAAGATGACATGTTATCCAGAGATGATGACTGGTCCATTGAAGGGAAGAATAACACTCTGTCATTTCCCTCATACTATATTGATGAAAATGCAGTTATTTGCTTGGATGGCGATGGCTGCAAAACTCGAAGTGGATCAACAACTAGTGAAGGTGATTTGAGCCTTGATACATCAATTGCTTGTGATTCATGTGACGTATGGTATCATGCTTTTTGTGTGGGATTTGATCCTGAAGGTACATCTGACGGCACATGGTTATGCCCAAGATGTGTGCCAGATAAAGTTACTGAAAAGATGGATGCAAGTTCATTAGAGAAGACAACCATGGAAATTAACCCAGAAAATGGTGACAAGGAATGTCAGGCTGATGAATCTTTTTCGGGAAAAGTTTCTGTATCTGTTGCTGATGCTGGAGAGACCGCTGTTGTTGTCTCTTTGGTTGAAGAAAGCCAATGGATTCCGATATCAAGAGAGAAGGGTCAGTCACCCCTTGAAGCTAGCAAGAATCCAATGACTGAATCATGTGCTTCCATATCTGACGCAAATAATCACCAAAGTAATACAGAGAAGACTATTAATTCACCAAGGGAGCAACAGGAGCTGGAGCTGTCCTTATCACACAATGGGGTTTGTAGCATGTCCTCTAACACCTTAAGGCCTGATGATTTGAAAAATGGCACTTTTGGAGATAAGAGTGATCCAAGCAGCTTAAGCGGAACAGAGATATTAAATGAATCCCGTTACAGAGCTAGTACATCTAGAAATGGATCTGATATGGGTCTTCATCTCGGTTTGTCAGTTGGCTCCTTTTTATGTGACATCAATGCAACAAGAGATCAGGAAACTGATCTGCAGCAGTCAAGTTCAGAAGAATTTATTTTGAAAGGAGATGAAATGGAACCAAATGCCCTTAAGGACAATGCTGGAGCAACAGGGGAAAAGAGAAAGCATGCTGATTACAGTAATGATGAGGTTCATATAGAAGTTGATAGAGATGCTGAACTCAAACCTGAAGTTGAATTACAAAAGAAACTTAGAACAGACGGCAGTCTACTGATTAATTATGAGAACGTAGCAGGTGCTCCTCTTTCAGATAATACTAAAACAAACCCTTCTACTACACCCATTTCCAGACACGATGATGAAAAAAATCTTTCAACAAAGGAGAATGCTGCATCAGATATAATGAGTATAGTTAAAGGCACAAAGTGGAAGCCTTCAAAGGGAATTTTTGGCTCCAAATCTTGTAATAAGTTATCTAAAAACAACGAAAATATGGCGGGTTTGAGGGTAAAAAAGATCATGAAGAGAGCTCCAGATCAAGGGGAGTCATCCTTAGTTCAAAACCTAAGGGAAGAAATTAGAGAAGCTGTCCGTAACGAATCCTCTAAAAATTTTGAAGAAAATCTTTTTGATACAAAGCTTCTTGCAGCATTCAGGGCTGCTGTAGCAGGGCCTAAAACTGAACCTGTAAATAAGCTGCCCCCTATGGCTTTGAAGACAAAGAAGTCAATGTTGCAGAAAGGAAAAGTTCGTGAACATCTAACTAGGAAAATTTTTGCTGCTTCAAATGGAAGAAGAAAGCGTGCATGGGACAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCAACGAAGCCTGAAAAGATTGAAACTTTGAAGTCAGTTCTGGATCTTCTAAGAAATAGTTCAGAGAGTGCAGAACCGAAAGAGGGTCCTGAAGGTCAGGCCAAAAATTCTATTATTTCCAGGTTGTATTTGGCAGATACATCTGTTTTCCCACGAAAAGATGATGTCAAGCCACTTTCTGTCCTTGAAACTGCTGCTAACTCAGAGCAGAATAAAAAATCTAGCCTTTCAGGAAAAGCATCAAATCAGTCTCTTGATAATACTCCTATTAGAGCAAAAGAGATAAATAATGTTTTACCAAAGGCCAGAGATTGCTCATCTGAAAATAAAGTAAATAAGAAGGTTGTACATAGCCCAGTTGGTGGTAATTCAGCTTCTGGTAAAGTACCTTCAAGCAGACACTCAGAAGCGGCAACAGGTTCTTGCCCCGGTGGCTCCAGAGTTGACTCAAAGGAGTCATGCGTTAAATCAGATTGTATAAAGAGTGACAAAAGAAAATGGGCCTTGGAGGTTCTTGCAAGAAAAACAGCTGCTGCGGGCAAGAAAATGACAAATGGCAATCAGGAAGATAATGCAATGCTTGAAGGAAATTATCCTTTACTGGCCCAATTGCCAGCTGATATGAGACCAGTATTAGCGCCCAGTTGCCACAAAAAAGTTCCTATATCAGTAAGACAGACACAACTTTACCGCCTGACTGAACACTTCTTGAGGAATGCAAATCTGTCGGTCATTCGCAGAACTGCAGATACAGAATTGGCTGTGGCAGATGCAATTAATATTGAAAAAGAGGTGGCTGACAGATCAAACAGCAAGCTAGTGTATCTGAATCTCTGTTCACAGGAGCTCTTGCGCCGTTCAAATAATAGAAAATCCAATGGAGCAACATATATAATTCCACAGGTCTCATCAGCAGTCCCTACTGATAGATCAGAACAAAATACTGATGATGATCTTTCAACTGACTCTGCAGTTCAAATAGCTCTTAAAAATGCTGGTCTTTCCTCTGATTCTCCTCCTTGTAGTCCAAGTGAGGAAAGAGAAATATCCAATAAAGAAGTTGATCTTTCAGGGCCTGATAATATCCTCGAACTGGATTTTCAACCAGAGATGGATATTTATGGGGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCAGGTGCTGCTAGAGGCTTAAATTCACAAGAAGAAGAAAGCGAGTCAAAAATGAAACTCGTTTTCTCTACCATGAATTTGAAAAATTCAGATACTGTTTTGGATAGTATGGACTCTGGGAGTTTGGAAAACAATGAAGTCCCACGAGATCCCTCCTGCTCATCGAATCATGATGATGCGGCTACGGCCAACACGGACCCTCCAATTAATGCAGAGATTGGCAATCCTCCTTCTGAGGCCCTTCTCAGTGAGCCATGTGACGCAGAATGCGAAGAATTATACGGTCCAGAGAAAGAACCACTAACAAAAAAATTTCTGAATGAGGAATTTATAACATTACATGAAGAGGGCAAGTCAGGAACTTCAACTGAAGGCAATGGCTCTCATAATAAAGAACAAGCATCAGACCAAGGAGTAAATGCATCTGAATCTGGGAATGACAAACTTGCAAAGAGTATGCCGGTCACTGCTGTTGCTGACAATTCATCTAATGCATCCGATACTAGTGAAAATTTACAGAGGAAGGGAGAAAAATCTGACACTGCTGCCGAGCAGTCCGACTCTGCAAATCATGTAGTTAGAAAGGTTGAAGCTTATGTGAAGGAGCATATCAGGCCACTGTGCAAGAGTGGTGTGATCACAGCTGAACAGTACAGGTGGGCTGTAACAAAAACAACGGAAAAGGTTATGAAGTACCATTGCAAAGCCAAGAATGCCAATTTCCTCATAAAGGAAGGCGAGAAAGTGAAGAAACTCGCAGAGCAGTATGTTGAAACAGCCCAACATAATAGGAAAAATTGA 3855 0.4067 MFIEEPFEPDENANNDNLFTEGEKCGICMDIVVDRGVLDCCQHWFCFACIDNWASITNLCPLCQNEFQLITCVPVYDTIGSNKIEDDMLSRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKTRSGSTTSEGDLSLDTSIACDSCDVWYHAFCVGFDPEGTSDGTWLCPRCVPDKVTEKMDASSLEKTTMEINPENGDKECQADESFSGKVSVSVADAGETAVVVSLVEESQWIPISREKGQSPLEASKNPMTESCASISDANNHQSNTEKTINSPREQQELELSLSHNGVCSMSSNTLRPDDLKNGTFGDKSDPSSLSGTEILNESRYRASTSRNGSDMGLHLGLSVGSFLCDINATRDQETDLQQSSSEEFILKGDEMEPNALKDNAGATGEKRKHADYSNDEVHIEVDRDAELKPEVELQKKLRTDGSLLINYENVAGAPLSDNTKTNPSTTPISRHDDEKNLSTKENAASDIMSIVKGTKWKPSKGIFGSKSCNKLSKNNENMAGLRVKKIMKRAPDQGESSLVQNLREEIREAVRNESSKNFEENLFDTKLLAAFRAAVAGPKTEPVNKLPPMALKTKKSMLQKGKVREHLTRKIFAASNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRNSSESAEPKEGPEGQAKNSIISRLYLADTSVFPRKDDVKPLSVLETAANSEQNKKSSLSGKASNQSLDNTPIRAKEINNVLPKARDCSSENKVNKKVVHSPVGGNSASGKVPSSRHSEAATGSCPGGSRVDSKESCVKSDCIKSDKRKWALEVLARKTAAAGKKMTNGNQEDNAMLEGNYPLLAQLPADMRPVLAPSCHKKVPISVRQTQLYRLTEHFLRNANLSVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLRRSNNRKSNGATYIIPQVSSAVPTDRSEQNTDDDLSTDSAVQIALKNAGLSSDSPPCSPSEEREISNKEVDLSGPDNILELDFQPEMDIYGDFEYDLEDEDYIGAGAARGLNSQEEESESKMKLVFSTMNLKNSDTVLDSMDSGSLENNEVPRDPSCSSNHDDAATANTDPPINAEIGNPPSEALLSEPCDAECEELYGPEKEPLTKKFLNEEFITLHEEGKSGTSTEGNGSHNKEQASDQGVNASESGNDKLAKSMPVTAVADNSSNASDTSENLQRKGEKSDTAAEQSDSANHVVRKVEAYVKEHIRPLCKSGVITAEQYRWAVTKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYVETAQHNRKN 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0778 1284 MobiDBLite consensus disorder prediction 754 769 - -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 1189 1207 - -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 696 779 - -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 313 341 - -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 383 405 - -
Lele51g0778 1284 ProSiteProfiles Zinc finger RING-type profile. 25 64 IPR001841 -
Lele51g0778 1284 SMART ring_2 115 174 IPR001841 -
Lele51g0778 1284 SMART ring_2 25 63 IPR001841 -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 961 983 - -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 1053 1100 - -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 246 281 - -
Lele51g0778 1284 SUPERFAMILY FYVE/PHD zinc finger 139 180 IPR011011 -
Lele51g0778 1284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 103 IPR013083 -
Lele51g0778 1284 PANTHER RING FINGER PROTEIN 41, 151 106 1275 - -
Lele51g0778 1284 ProSiteProfiles Zinc finger PHD-type profile. 115 177 IPR019787 -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 445 471 - -
Lele51g0778 1284 SUPERFAMILY RING/U-box 16 70 - -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 242 281 - -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 961 975 - -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 1135 1167 - -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 1174 1188 - -
Lele51g0778 1284 SMART PHD_3 123 175 IPR001965 -
Lele51g0778 1284 ProSitePatterns Zinc finger RING-type signature. 41 50 IPR017907 -
Lele51g0778 1284 Pfam PHD-finger 140 176 IPR019787 -
Lele51g0778 1284 Pfam Ring finger domain 24 64 IPR001841 -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 696 721 - -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 294 341 - -
Lele51g0778 1284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 182 IPR013083 -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 1135 1207 - -
Lele51g0778 1284 MobiDBLite consensus disorder prediction 1053 1089 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0778 Lele-ChrLele51 4695405 4704644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0778 21 67 C3H Transcription Factor Family AT2G39100 38.000 2.41e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele51g0778 PHD 1.3e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0778 51 4695405 4704644 Lele51g0778 51 4695405 4704644 ECH
Lele49g0753 49 4572569 4581773 Lele51g0778 51 4695405 4704644 hybridization
Lele50g0796 50 4900644 4903430 Lele51g0778 51 4695405 4704644 hybridization