Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0766 ATGACAACCTTATTATTATTAGCCTCTCTGTCATTATTGGTGATAATCCAGTGCGTAAGTGGGGCTCAAGTAGAAGCTTGCAAGAGCAATTCTTGTGGAGGAATCGAGATTAAGTTTCCTTTCGGTTTAACGGAAGCCAACCAGAGTCGTCGATGTGGCTACCCTAACTTCAGTGTTTCATGCAACAATCAGGGTGAGACCATCCTCACGTTACCAGAATCCGGCGACTTGGTGATCAAAGCCATCGATTACGCCTCACAAACTCTTTGGGTCAACGATCCGAATCAATGTCTACCCAGAAGGTTCTTGCAGGGTCTCGACCTTTCGGATTCGCCCTTCCGGTTCGACCCGGGCCTTTACAATCTCATCAACCTCACTTTCCTTCGTTGTCCTTCCAACCTCACGCAAAATTGGCTCACTTCAGTTCGTTGTCTTAAGGATCTCGCCAATTCCTCTTCCACTGTCACTTACTTTTGGAGGCCAACCATTCCTCCGCCCTTGAATGATTCTTGTGAGGTCATTAATTCTTCGGTTCCCTACCCGATTTCCAACATCGACCCGTGGTCTTTCTGGGTCGATATCGGCGATGATTTGCAGTTGACGTGGGGCAGGCCCCGTTGTTCCCGCTGTGAATCTCGAGGACAAGATTGTGGGTTCGCTCAGAATATGGGTCTCCGAACCGGATGTTTCTCTCGTCCCCAAGAAAGCTCAGGTCTTCCAAGAGGTGTAAAATATGGGCTAACAATAGGAGTGGGAATACCCGGGCTCCTGTGTTTAATTGGGCTCACTTGTTACATGTGTGGCAAGATACGACAACGTCGCAATCTCAGGCCCAGCATAGCTCTTCCCATCACGTCATTTGTGGTCCAGTCCGGCCCATTTAAAATGGGCCTCGATGGGTCCACAATAGAGAAGTATCCCATGACTCTTCTTGGAGAGAGTAGGCGGCTACCCAAGCCCAGTGACAACATTTGCTCAATATGCCTGTCGGAGTATGAGCCCAAGGAGACCTTGCGAACCATACCCGATTGCAATCATTATTTTCACGCACACTGTATAGATGAATGGCTCAAGATGAATGCCACGTGTCCCGTTTGCAGGAATTCACCTTCTTCTCCTTCAACTTCTTCATCCATGTCTCCTTCTTCCTCCTTAGCCTCTTCACATTAG 1170 0.4855 MTTLLLLASLSLLVIIQCVSGAQVEACKSNSCGGIEIKFPFGLTEANQSRRCGYPNFSVSCNNQGETILTLPESGDLVIKAIDYASQTLWVNDPNQCLPRRFLQGLDLSDSPFRFDPGLYNLINLTFLRCPSNLTQNWLTSVRCLKDLANSSSTVTYFWRPTIPPPLNDSCEVINSSVPYPISNIDPWSFWVDIGDDLQLTWGRPRCSRCESRGQDCGFAQNMGLRTGCFSRPQESSGLPRGVKYGLTIGVGIPGLLCLIGLTCYMCGKIRQRRNLRPSIALPITSFVVQSGPFKMGLDGSTIEKYPMTLLGESRRLPKPSDNICSICLSEYEPKETLRTIPDCNHYFHAHCIDEWLKMNATCPVCRNSPSSPSTSSSMSPSSSLASSH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0766 389 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 371 - -
Lele51g0766 389 MobiDBLite consensus disorder prediction 370 389 - -
Lele51g0766 389 CDD RING-H2_PA-TM-RING 325 367 - -
Lele51g0766 389 SUPERFAMILY RING/U-box 319 370 - -
Lele51g0766 389 SMART ring_2 325 366 IPR001841 -
Lele51g0766 389 Pfam Ring finger domain 324 367 IPR001841 -
Lele51g0766 389 Pfam Wall-associated receptor kinase galacturonan-binding 27 93 IPR025287 GO:0030247
Lele51g0766 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 372 IPR013083 -
Lele51g0766 389 ProSiteProfiles Zinc finger RING-type profile. 325 367 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0766 Lele-ChrLele51 4633842 4635870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0766 21 371 C3H Transcription Factor Family AT2G46495 36.872 4.08e-58 191