Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0764 ATGGCTAACTTCGCAGGTTGCTTCTTGTTTTCAACACTAGTTTTCCTTCTTCACATAACAAGAACCACTCAACAAACGTGTGAAACAAGATACTGCGGAGACCCTGCATTTGGACCCTCAATTCAGTACCCTTTTTATTTGAAAGGAGTTCAAAGCGATGGTTGCGGGCACCCAAACTTCGGAGTTTACTGCGACAACCTTAACCAGATATTGATCACACTCGGAGATGCTGGAGATTTTGTTGTCAAAGAGATCTCTTTCAAGGACCACGAAACTTGGATGAATGACCCAAATCACTGTCTTCCCTCACGCTTCCTCAACGGCTTAGACATTCAACTTCAATCTTCGCCTTTCCGATGGAGCTCCGATTACTTTAGTTTCCTCAACTTCGACTTTCTCAACTGTACTTCCCCAGTGCCTGATGACTCCGTTCAGTTCGCTCACAAAATAGCTTGCCTCAGCAGTGCCGACGACAGTGACCATTATTTCTCGGTTGTCGCTGTTTTGTCGGATCCTTCCTTTCCAACAACAACGATCCGAGGATGCCGGCATATTTCCTCGTCTTTAGTTCCAGTTAAAAGTTTCGAACCCGAGCAATTATGGAAGAACCTTTACTCCGATATTCGGTTGAAATGGATCGAACCTAACTGCATGCTCCCCACGAATCCGGCTCCTGACGATGAAGATACTTGCTATAACAATTCTCTGTACCCAGAACCTCCACATTACAAAATTTACCAAATATTAGCAGTGGGAGTTGCTGGAACGGTATGCTTTTGTGTGGCCGGACTGGCACGTTTGTTAGGGGCTAAGGTGGATCGGGACGGTTTGCCACGGCAGCGGAGGATGAACGTAGAGTTAGAGAGGAACACGACGGCGGAATCCGTTGACATGGGAATGGGGCTTGATGAGTCAACCATTGAACAGTATCCGAAAACACAAGTTGGAGACAGTGGAAAATTGCCCAATCCTAGCGACAACGTTTGCTCTATATGTCTGAGCGAGTATGAGCCACTTGACACATTGAGAACCATTCCTCACTGTAATCACTATTTTCATGCCCATTGTATAGATGGTTGGCTCAAGAAGAAGGGCACGTGCCCTCTGTGTCGTCATCTTCCTACTCATGCTTCTTCATTGTCCCTCACCCCCACTTAA 1158 0.4637 MANFAGCFLFSTLVFLLHITRTTQQTCETRYCGDPAFGPSIQYPFYLKGVQSDGCGHPNFGVYCDNLNQILITLGDAGDFVVKEISFKDHETWMNDPNHCLPSRFLNGLDIQLQSSPFRWSSDYFSFLNFDFLNCTSPVPDDSVQFAHKIACLSSADDSDHYFSVVAVLSDPSFPTTTIRGCRHISSSLVPVKSFEPEQLWKNLYSDIRLKWIEPNCMLPTNPAPDDEDTCYNNSLYPEPPHYKIYQILAVGVAGTVCFCVAGLARLLGAKVDRDGLPRQRRMNVELERNTTAESVDMGMGLDESTIEQYPKTQVGDSGKLPNPSDNVCSICLSEYEPLDTLRTIPHCNHYFHAHCIDGWLKKKGTCPLCRHLPTHASSLSLTPT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0764 385 CDD RING-H2_PA-TM-RING 328 371 - -
Lele51g0764 385 Pfam Wall-associated receptor kinase galacturonan-binding 27 96 IPR025287 GO:0030247
Lele51g0764 385 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 373 - -
Lele51g0764 385 ProSiteProfiles Zinc finger RING-type profile. 329 371 IPR001841 -
Lele51g0764 385 SMART ring_2 329 370 IPR001841 -
Lele51g0764 385 Pfam Ring finger domain 328 371 IPR001841 -
Lele51g0764 385 SUPERFAMILY RING/U-box 323 374 - -
Lele51g0764 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 375 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0764 Lele-ChrLele51 4628606 4630546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0764 25 377 C3H Transcription Factor Family AT2G46495 29.363 6.45e-36 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0744 49 4521518 4525500 Lele51g0764 51 4628606 4630546 hybridization
Lele50g0785 50 4836090 4837418 Lele51g0764 51 4628606 4630546 hybridization