LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g0753	ATGATTGTTCATCCTTTGCCAACAATGCCAACAAGAATCTCACTAGAAAGTTTTGCCAGAACCATGGAGGGATTTCACGAGAGAGATGCTCAGCTTGAACCGTATAACATTGCTGATATAGGGTCATCTCTATCAAATCTGATATTATCTGGTGGTACGAACCCCTTGGATTCTATTTTGTCTCTTTGCCCTCAAACAACCGCCACAAGCAACCCCATGTTTGAAGCCTTGGCAGGTTCGTGCGGTTTTGAACCTTTGGGCTCGTCGGTGTACCTTCGTCAACGAGATATTCTGCAGAAATTCTACGAGGATAACCGAGTGAGTAGTTCATTTGGCGGTTTATCATCGACAAATCAAGGTCTAAACTTTGCAGGAGCAACATCATCGTACTCATACATGAACAACCCCAGCAAGAAGAAGCTATACAGGGGAGTGAGACAGAGACACTGGGGAAAATGGGTTGCAGAAATCAGACTTCCTCAGAACAGAATGAGAGTGTGGTTAGGCACTTATGAAACTGCTGAAGCTGCTGCTTATGCCTACGATCGTGCCGCTTATAAGCTCCGAGGCGAATATGCTCGTTTGAATTTCCCGAATCTAAAGGACCCCAGTAAGTTAGGATTCGGAGATAGCTCCAGATTAAATGCTTTGAAAACCTCTGTAGATGCTAAAATTCAGGCTATCTGTCAAAAGGTGAAGAGGGAGAAAGCCAAGAAGAAGAGCAGCGCTAAGAAGCCTAATAATCCCATTCCCAGCCCCGAACAGAGTGAGAAATCACAGAAGATTGAGTCGTCTTCTTGTTCATCATCCTCGCTACCCTTGTCCCCGTTAGTTTTTGACGATAACTGGACAAACGAGTTCATTTCACCGACGATTTCAGAAGACGGAATATGGAAGGGCGACAACTCGCCGTCAACGGTCTCAACTGATTTTTCGACAATGTTAACAGAGGAATCAGAATTGGAAGGTTGTTCCCTGGCAAGGATGCCTTCCTTCGATCCGGAGTTAATTTGGGAAGTTCTTGCTAATTAA	1032	0.4477	MIVHPLPTMPTRISLESFARTMEGFHERDAQLEPYNIADIGSSLSNLILSGGTNPLDSILSLCPQTTATSNPMFEALAGSCGFEPLGSSVYLRQRDILQKFYEDNRVSSSFGGLSSTNQGLNFAGATSSYSYMNNPSKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSKLGFGDSSRLNALKTSVDAKIQAICQKVKREKAKKKSSAKKPNNPIPSPEQSEKSQKIESSSCSSSSLPLSPLVFDDNWTNEFISPTISEDGIWKGDNSPSTVSTDFSTMLTEESELEGCSLARMPSFDPELIWEVLAN	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g0753	343	FunFam	Ethylene-responsive transcription factor 2	140	199	-	-
	Lele51g0753	343	PRINTS	Ethylene responsive element binding protein signature	142	153	IPR001471	GO:0003700\|GO:0006355
	Lele51g0753	343	PRINTS	Ethylene responsive element binding protein signature	164	180	IPR001471	GO:0003700\|GO:0006355
	Lele51g0753	343	CDD	AP2	140	200	IPR001471	GO:0003700\|GO:0006355
	Lele51g0753	343	Pfam	AP2 domain	142	191	IPR001471	GO:0003700\|GO:0006355
	Lele51g0753	343	ProSiteProfiles	AP2/ERF domain profile.	141	198	IPR001471	GO:0003700\|GO:0006355
	Lele51g0753	343	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	63	341	-	-
	Lele51g0753	343	MobiDBLite	consensus disorder prediction	233	272	-	-
	Lele51g0753	343	Gene3D	AP2/ERF domain	141	199	IPR036955	GO:0003700\|GO:0006355
	Lele51g0753	343	SMART	rav1_2	141	204	IPR001471	GO:0003700\|GO:0006355
	Lele51g0753	343	SUPERFAMILY	DNA-binding domain	141	198	IPR016177	GO:0003677
	Lele51g0753	343	MobiDBLite	consensus disorder prediction	245	272	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g0753	Lele-ChrLele51	4555270	4557332	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g0753	37	343	AP2-EREBP Transcription Factor Family	AT1G64380	48.961	8.26e-69	217

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele51g0753		AP2	4.5e-13	CL0081