Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0744 ATGGCTGAGATAATTGCCGAAGTGTCCTTCGATCAAGTCCCGTCGAGGAAGCAGAGAAGCCGAAGAGCGTTGAAGGATAAAAATCCCTCAACCAATGATGTCAAATCCTTGGCCAAGAAGCTGCCCGATTCCTCCTCACCACCGTTTTCTATGGAATCAGACGCCGGAAAGGAGAACCAACCCAGCGCCTCTCAACCCCGCTCCTCAGCCAAGAAGGGAAAAGCTGCCTCCAAGAAACAGTCAAAGCAATCTTTTGAGAAAGATTTGCTAGAAATGCAGGAGATGCTGCAGAAGTTGCGCCTTGAGAAGGAGAAGACTGAAGAGCTCTTGAAGGTCAAAGATGAGATGTTGAAGCAGAAGGAAGAAGAGCTTGACGAGCGTGGCCGCGAGCGGGAGAAGCTTCAGATTGAGTTGAAAAAATTACAGAAGCTCAAGGAGTTCAAACCCACCATGAATTTGCCTGTGCTGAGAGACCAGGAGCAAGAAAAGGATAAGAAGAAGAAGAATGGATGTGCTGTGAAAAGGCCTTCTCCACCTTACATTTTGTGGAGCAAAGATCAATGGGCTGAGATTAAGAAAGTGAATCCAGTGGCAGAATTCAAGGAAATTTCAAATATGTTAGGGTCTAAATGGAAGACCATCAGTGAAGAAGAGAAACGGCCTTATGAGGAGAAATATCTCATTGAGAAAGAAGCGTATCTGCGGGTAATCACGAAGGAGAAACGTGAAAGTGAAGCGATGAAGCTCCTAGAAGAGGAACAAAAGCAGAAGACTGCCATGGAATTGCTCGAACAGTACATGCTGTTCAAACAAGAAACAGAGAAAGAAAGCAAGAAAAACGGAAAAGAGAAGGATCCACTGAAACCAAAGCATCCTGTGTCAGCTTTCATCTTGTACACAAATGATAGGCGGGCAGCTATTCTTGCGGAGAACAAGAGTATCTTGGAGGTTTCAAAGATTTCTGGTGAGGAGTGGAAGAACATGACAGAAGAACAGAAGAGACCTTATGAAGAGATGGCAAGGAAGAATAAGGAGAAATATCTTCAAGAAATGGAGGTTTACAAACAGAAGAAGGATGAGGAGGCTGCGAATCTCAGGAAGGAAGAGGAGGAGAAAATGAAACTTCAGAAAGAAGAAGCCTTGAAACTGCTGAAGAAGAAGGAGAAAACAGAAAATCTGATCAAGAAGTCAAAGAGAAAGAAAAAGAGCAAGGAAGATAAGAATTGTGATCCTAACAAGCCAAAGAGACCACCATCCTCGTTTCTGCTATTTAGCAAAGAAGCAAGGAAGAGCATACAGGAGGAACGACCAGAGATGAATAACTCAACGGTGACCGCACTTGTATCGGTGAAATGGAAGGAACTGAGCGAGGAAGAGAGAAAAGTGTGGAACGACAAAGCCGCGGAGGCAATGGAGGCATACAGGAAGGAATTGGAGGAGCACAATAAATGCATAGCAGCTAAGTTGGACCAGAAAACAGAAGAATGA 1488 0.4442 MAEIIAEVSFDQVPSRKQRSRRALKDKNPSTNDVKSLAKKLPDSSSPPFSMESDAGKENQPSASQPRSSAKKGKAASKKQSKQSFEKDLLEMQEMLQKLRLEKEKTEELLKVKDEMLKQKEEELDERGREREKLQIELKKLQKLKEFKPTMNLPVLRDQEQEKDKKKKNGCAVKRPSPPYILWSKDQWAEIKKVNPVAEFKEISNMLGSKWKTISEEEKRPYEEKYLIEKEAYLRVITKEKRESEAMKLLEEEQKQKTAMELLEQYMLFKQETEKESKKNGKEKDPLKPKHPVSAFILYTNDRRAAILAENKSILEVSKISGEEWKNMTEEQKRPYEEMARKNKEKYLQEMEVYKQKKDEEAANLRKEEEEKMKLQKEEALKLLKKKEKTENLIKKSKRKKKSKEDKNCDPNKPKRPPSSFLLFSKEARKSIQEERPEMNNSTVTALVSVKWKELSEEERKVWNDKAAEAMEAYRKELEEHNKCIAAKLDQKTEE 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0744 495 Coils Coil 337 407 - -
Lele51g0744 495 MobiDBLite consensus disorder prediction 157 171 - -
Lele51g0744 495 MobiDBLite consensus disorder prediction 46 71 - -
Lele51g0744 495 SUPERFAMILY HMG-box 400 480 IPR036910 -
Lele51g0744 495 Coils Coil 82 144 - -
Lele51g0744 495 MobiDBLite consensus disorder prediction 355 374 - -
Lele51g0744 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 173 241 IPR009071 -
Lele51g0744 495 MobiDBLite consensus disorder prediction 1 89 - -
Lele51g0744 495 SMART hmgende2 288 356 IPR009071 -
Lele51g0744 495 SMART hmgende2 172 242 IPR009071 -
Lele51g0744 495 SMART hmgende2 413 483 IPR009071 -
Lele51g0744 495 MobiDBLite consensus disorder prediction 152 173 - -
Lele51g0744 495 CDD HMGB-UBF_HMG-box 174 237 - -
Lele51g0744 495 CDD HMGB-UBF_HMG-box 289 352 - -
Lele51g0744 495 Pfam HMG (high mobility group) box 289 355 IPR009071 -
Lele51g0744 495 Pfam HMG (high mobility group) box 414 480 IPR009071 -
Lele51g0744 495 Pfam HMG (high mobility group) box 173 235 IPR009071 -
Lele51g0744 495 Coils Coil 464 495 - -
Lele51g0744 495 MobiDBLite consensus disorder prediction 14 33 - -
Lele51g0744 495 Gene3D High mobility group box domain 394 492 IPR036910 -
Lele51g0744 495 Gene3D High mobility group box domain 157 261 IPR036910 -
Lele51g0744 495 Gene3D High mobility group box domain 272 368 IPR036910 -
Lele51g0744 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 414 482 IPR009071 -
Lele51g0744 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 289 355 IPR009071 -
Lele51g0744 495 SUPERFAMILY HMG-box 282 360 IPR036910 -
Lele51g0744 495 CDD HMG-box 414 479 - -
Lele51g0744 495 MobiDBLite consensus disorder prediction 386 440 - -
Lele51g0744 495 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 6 491 IPR044601 GO:0003677
Lele51g0744 495 SUPERFAMILY HMG-box 162 236 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0744 Lele-ChrLele51 4509171 4511237 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele51g0744 HMG_box 2.2e-17 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0744 51 4509171 4511237 Lele51g0744 51 4509171 4511237 ECH
Lele49g0723 49 4406891 4408959 Lele51g0744 51 4509171 4511237 hybridization
Lele50g0763 50 4704509 4706618 Lele51g0744 51 4509171 4511237 hybridization