Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0676 ATGGGCGGTTGCTGTTGCTGTTGCTGTTCTCCCAAAGAAACTGAACTGAGCGATCCCCCGGCGTACTTCTATCACCCAAGAGCATCGGAGGAGCGTGTTCCTCTATCATCTAATCATGGTTCTGCCTCTGCTTTCTCTAGAGGGCTCCTAGTTGATACTAATCTTGAAACTTCAAGTCCTGACACTTATAGACCACCACCTGCTCCTGTACCTTACAGCAGCGTTACTTTGGTTGTCACTCAAACTCCACCTGGGGTTCAAGAAATTAATGATAATAAGACTAATGCATCCCTTCAATCTACAAATCCTAATTCAGTTCAAGAATTAGTTACTAGTGATGGTCATGGAAATTTGACCAAGTTGGAAGAGCAGAAGGAACTAGAAAGTAAAGTTCAGGGTGATTTAGAACTGGACTCAGCTAAGGATTCAGAAATTGAACTTCAAAAGCTAGAAGAACCTGTCATATTAGCTGAAGAGGAGGATGCATGCACTATCTGTTTAGAAGAGTATGATGCCGAGAATCCAAAACTCAACACAAAATGTGATCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAAACTGTCCTGTGTGTGATAAGGATATGGTTTTCGAGTCTCCAATTGATTAA 645 0.4171 MGGCCCCCCSPKETELSDPPAYFYHPRASEERVPLSSNHGSASAFSRGLLVDTNLETSSPDTYRPPPAPVPYSSVTLVVTQTPPGVQEINDNKTNASLQSTNPNSVQELVTSDGHGNLTKLEEQKELESKVQGDLELDSAKDSEIELQKLEEPVILAEEEDACTICLEEYDAENPKLNTKCDHHFHLACILEWMERSENCPVCDKDMVFESPID 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0676 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 210 IPR013083 -
Lele51g0676 214 SMART ring_2 163 203 IPR001841 -
Lele51g0676 214 CDD RING-H2 163 203 - -
Lele51g0676 214 Pfam Ring finger domain 162 203 IPR001841 -
Lele51g0676 214 SUPERFAMILY RING/U-box 156 209 - -
Lele51g0676 214 FunFam Putative E3 ubiquitin-protein ligase RHB1A 140 208 - -
Lele51g0676 214 ProSiteProfiles Zinc finger RING-type profile. 163 204 IPR001841 -
Lele51g0676 214 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 40 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0676 Lele-ChrLele51 4102540 4104567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0676 1 214 C3H Transcription Factor Family AT5G41350 52.535 3.76e-66 201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0659 49 4003338 4005332 Lele51g0676 51 4102540 4104567 hybridization
Lele50g0689 50 4256955 4258679 Lele51g0676 51 4102540 4104567 hybridization