Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0674 ATGGCACGATGGTCAGGTTTCACAAACGGATCTTCCGAAGATTGCCTTGAAACTGTTGGAGGACATCTGGGTAATGACTGCTGCCTCAACGTTGCTTATGTTATTAGAGATCAACATGATGATGAAATTAAACTAGAGTGCTTGTTTCATCAACTTCTATCAATTTATATAAAGGAGAAGAATTCTGGAGGCATTATTCGTCCTTTGCCTATAATGCTTGGTGATGATCAGTCGTTGGATTTATACAAACTGTTCTTCTTAGTGAAGGAAAGAGGTGGGTATGCTTTGGTGTCGAAGAAAGGATTGTGGGGTTTCGTGACTAAGGAATTGGGTTTGAACCCCAAGCTTTTGGCTTCGGTGAAATTAGTGTATGACAAGTATTTGAATGAGTTTGAAAGATGGATTAGCCAAACTCGTGGAGGAAAAAATTTCAAAAATGGTAATCATGGGTGTAATATGGATTTTAAGTTAGTGCCGTCAGAGCTAGTAAAAGAATTTAGAGATTTATTATATGGCGATGCCAAGATGAAGGATGATGTAACTGTTCAGCTGCAATCAAGTAAAATGAGAAGGAACATTGACTTGCTTAATCACAAGAGTGAAATGAACTTGTTGGACAACAAAAATGAACCTCCTGTATGTGAGAATGTCCACAGTATCCTTGGTGATGATGACTTGAAATTTTGTAACAGTGTAGAGGATGATCTTCTTAGCTTGAACTCAGAAGTTCCCATGAAGGAATTTAATTCTCGCAAGCGCAAACGAGAAGTATTATCCCCAATGCTGAACTGGATCAGAAAACTTGCAAAGCATCCTCTCGATCCTTCAATTGAACTGATACCAGAATCATCTAAGTGGAAGGAGTATAAAGGACAAGATTTTTGGGTTCAGATACTTAGAGCAAGAGAGGCACTGCAGCTGAGGTCTTGCGACAAACCAAACTGTAGGCAGTCTTCCTTGCAGAAGCAAAAGATGCATCCTGCCATGTATGAGGATCATGCTGCTGTCAGTCACCGTTCTACGGCAAAACTCAGATGGAGCAAAAGGCTGCCCACCTCAGTTAATTCTCATACATGCTCTTGTTGCGATTCACGTTCAGCTATTGAAAACAAGTTATCATGTTCAGTCACCACTGAGGCAGAAAATGCTTCACCAGAGAAAACAACAGCAGCAGATGGTTTGTTGAATGCAAAGGAAACAGCTAACCCGTCCACAGATGACGCTGTTAAAAAACAAGTAGCTATTGGTCCTCTTTTTCAAGCTGAAGTGCCAAAATGGACTGGTGTAGTTTCTGAAAGCAATTCTAAATGGTTGGGCACACAAGTATGGCCTTTGAAGGATAGGGACCCACAACCCGTTATTGAGACCGGTATTATTGGGAGAGGAAGAAGAGAGACTTGTAGCTGTCAAGTTAAAGGTTCTGTTGAATGTGTTAGATTTCATATTGCTGAGAAGAGGATGAAGTTGAAGCTTGACTTGGGTTTAGCATTTTACCAGTGGGAATTTCATCGTATGGGGGAGGAAGTTTCACTTCAATGGACTGCTAAAGAAGAAAAGAAATTCAAAGATATGATATCAGATTCAAATCTGCCCTCCCAAAATTGGATCAAGCCGTTCAAGTATTTTCCAAAGAAGACAAGGAGAAGCTTGATTAGCTATTACTTCAATGTATTTCTTATTCAACGCAGGATTTATCAGAATCGCGTGACTCCAAATAATGTCGATAGTGATGATGACGAACATGAATTTGGATCTTTTACCGATGGCTTCGGGATAGAAGCTGTAAAGGGTCCAGGTTGTAACTTTCTGGAGTGTTCACAGAACAACCGATGCATTGAGTTGGCGTGA 1848 0.4042 MARWSGFTNGSSEDCLETVGGHLGNDCCLNVAYVIRDQHDDEIKLECLFHQLLSIYIKEKNSGGIIRPLPIMLGDDQSLDLYKLFFLVKERGGYALVSKKGLWGFVTKELGLNPKLLASVKLVYDKYLNEFERWISQTRGGKNFKNGNHGCNMDFKLVPSELVKEFRDLLYGDAKMKDDVTVQLQSSKMRRNIDLLNHKSEMNLLDNKNEPPVCENVHSILGDDDLKFCNSVEDDLLSLNSEVPMKEFNSRKRKREVLSPMLNWIRKLAKHPLDPSIELIPESSKWKEYKGQDFWVQILRAREALQLRSCDKPNCRQSSLQKQKMHPAMYEDHAAVSHRSTAKLRWSKRLPTSVNSHTCSCCDSRSAIENKLSCSVTTEAENASPEKTTAADGLLNAKETANPSTDDAVKKQVAIGPLFQAEVPKWTGVVSESNSKWLGTQVWPLKDRDPQPVIETGIIGRGRRETCSCQVKGSVECVRFHIAEKRMKLKLDLGLAFYQWEFHRMGEEVSLQWTAKEEKKFKDMISDSNLPSQNWIKPFKYFPKKTRRSLISYYFNVFLIQRRIYQNRVTPNNVDSDDDEHEFGSFTDGFGIEAVKGPGCNFLECSQNNRCIELA 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0674 615 Pfam ARID/BRIGHT DNA binding domain 49 132 IPR001606 GO:0003677
Lele51g0674 615 Gene3D - 34 148 IPR036431 GO:0003677
Lele51g0674 615 CDD ARID 49 132 - -
Lele51g0674 615 SUPERFAMILY ARID-like 40 139 IPR036431 GO:0003677
Lele51g0674 615 CDD SANT 513 558 IPR001005 -
Lele51g0674 615 ProSiteProfiles ARID domain profile. 43 136 IPR001606 GO:0003677
Lele51g0674 615 SMART bright_3 44 137 IPR001606 GO:0003677
Lele51g0674 615 SMART ARID_2 40 132 - -
Lele51g0674 615 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 40 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0674 Lele-ChrLele51 4092105 4096251 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele51g0674 ARID 5.2e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0658 49 3994944 3999451 Lele51g0674 51 4092105 4096251 hybridization
Lele50g0688 50 4249379 4253226 Lele51g0674 51 4092105 4096251 hybridization