Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0651 ATGAGGCATGGAGTCGCTTTCCAATACCTGGAGGAGACTATTCGCGAGGCCATTGAAGATGCTGGGTTTGAAGCTACATTGCTAATAGATGAGATGAATGAGAGATCTGTTCAAGTATGTCCCATAACCGTAACTGGAACGACTTGCACTTCTTGCTCCTCCACTGTTGAAACAGCTCTGCAAGCAATTCCAGGTGCGCTGAAACCTCAAGTTTATTTGGTAACTAATGAAGCGGAAGTACACTACAATCCAAACATTGTCAACCACAATCAAATTCTGGAAGCCATAGAAGACACTGGATTTGAAGCCACACTTATCAGTTCAGGTGAAGACATAAGCAAAGTAGAGCTCCAAGTTGAGGGTGTACAAACTGAAGTTTCCATGAGAAACGTTGAAACTTCTCTTCAAGCTCTCCCAGGTTTTAAGATGGGCGCTTTCCACGCCAGTACAGTTCATAATTGGCCGGAGATTTATTCTGGATCTTACAAAGCGTCACGCCATAGTTCTGCCAATATGGACGTCTTGATTGCCTTGGGAACAAATGCAGCATACTTCTACTCAAATCTGGAAGTCTTCACCAAGGGGAAGACATCTGATGCTATTGCCAAGCTCATGAACTTGACCCTGGACACAGCTATATTGCTGACCCTGGACAAGGAAGGGAATGGCCACGTGAATGAGAGCATGATAACTGGGGAGGCACGTCCTGTTGCAAAGAGGAAGGATGCTCTTTCGCAGATTGTTCGACTAGTTGAATCAGCACAGTTGGCCAAGGCTCCTGTGCAGAAGTTTGATGATCGCATTTCAAAATTCTTTGTGCCTTTGGTCATTTTAATCTCTTTCTCCACTTTTCTTGCATGGTTCTTAGCCGGAAGGTTCCATGCTTACCCGAAGTCTTGGATACCATCTTCCATGGATAGTTTTGAGCTTGCTTTACAGTTTGGCATCTCTGTCATGGTCATAGCTTGCCCTTGTGCTCTAGGTCTAACCACACCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAAGGGGTACTAATCAAAGGAGGGCAAGCATTAGAAAGTACACATGAGGTGAAATGCATTGTCTTCGACAAGACTGGTACTCTCACCATTGGGAAGCCTGTGGTTCTAAACACTAAACTATTGATTAATATGGTACTCCAAGAATTCTATGAACTTGTGGCAGGAGCTGAGGCCATTGTTCGAAACAAGGAAATAATAGTGGGTAACAAGAGCTTGTTGGCTGACCATAATATTGCAGTTCCTGTGGAGGCGGAAGATATACTGGCTGAGGCTGAGGGGAAGGCTCAAACTGGAATTTTGATATCGATTAATAGGGAAGTGGCTAGAGTTGTAGCAGTATCTGATCCATTGAAACCGGGTGCTCAAGAAGTGATCTCAATTCTCAAGTCCATGAACATGAAAAGCATCCTAGTAACCGGTGACAACCGGGGAACTGCTGATTCTATAGCAAGGGAAGTCAGGATTGAAGAAGTCTTTGCTGAGACTAAACCGGAGGAGAAAGCAGAGAAAGTGAAGGAGTTGCAGGCTGCTGGATATACCGTGGCAATGGTTGGGGATGGTATCAATGATTCACCAGCACTTGCAGCAGCAAACGTGGGAATGGCAATTGGTGCAGGCACCGACATAGCTATTGAGGCTGCAGACATTGTTCTGATGAAGAGCAACTTGGGGGATGTGATAACTGCCATTGATCTTTCCAGAACATTTTTCCATATTCGTCTCAATTACATTTGGGCTTTGGGTTATAATCTTCTTGGCATTCCAATCGCTGCCGGAGTTCTTTTCCCTTTTACAGGACTCAGATTGCCACCTTGGATTGCCGGGGCTGCAATGGCAGCCTCATCTGTGAGTGGTGTTTGTTGTTCTTTATTGCTGAAATATTACAGAAGGCCTAAGAAACTGGACAAGCTTGAGATTCGAGGCATCAGGATAGAATGA 1971 0.45 MRHGVAFQYLEETIREAIEDAGFEATLLIDEMNERSVQVCPITVTGTTCTSCSSTVETALQAIPGALKPQVYLVTNEAEVHYNPNIVNHNQILEAIEDTGFEATLISSGEDISKVELQVEGVQTEVSMRNVETSLQALPGFKMGAFHASTVHNWPEIYSGSYKASRHSSANMDVLIALGTNAAYFYSNLEVFTKGKTSDAIAKLMNLTLDTAILLTLDKEGNGHVNESMITGEARPVAKRKDALSQIVRLVESAQLAKAPVQKFDDRISKFFVPLVILISFSTFLAWFLAGRFHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLTTPTAVMVGTGVGASQGVLIKGGQALESTHEVKCIVFDKTGTLTIGKPVVLNTKLLINMVLQEFYELVAGAEAIVRNKEIIVGNKSLLADHNIAVPVEAEDILAEAEGKAQTGILISINREVARVVAVSDPLKPGAQEVISILKSMNMKSILVTGDNRGTADSIAREVRIEEVFAETKPEEKAEKVKELQAAGYTVAMVGDGINDSPALAAANVGMAIGAGTDIAIEAADIVLMKSNLGDVITAIDLSRTFFHIRLNYIWALGYNLLGIPIAAGVLFPFTGLRLPPWIAGAAMAASSVSGVCCSLLLKYYRRPKKLDKLEIRGIRIE 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0651 656 PRINTS P-type cation-transporting ATPase superfamily signature 528 547 - -
Lele51g0651 656 PRINTS P-type cation-transporting ATPase superfamily signature 475 485 - -
Lele51g0651 656 PRINTS P-type cation-transporting ATPase superfamily signature 551 563 - -
Lele51g0651 656 PRINTS P-type cation-transporting ATPase superfamily signature 226 240 - -
Lele51g0651 656 PRINTS P-type cation-transporting ATPase superfamily signature 365 379 - -
Lele51g0651 656 FunFam Probable copper-transporting ATPase HMA5 456 584 - -
Lele51g0651 656 Gene3D - 38 110 - -
Lele51g0651 656 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 399 654 - -
Lele51g0651 656 SUPERFAMILY HAD-like 364 632 IPR036412 -
Lele51g0651 656 ProSitePatterns E1-E2 ATPases phosphorylation site. 367 373 IPR018303 -
Lele51g0651 656 Pfam E1-E2 ATPase 243 343 - -
Lele51g0651 656 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 221 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele51g0651 656 CDD HMA 42 104 IPR006121 GO:0046872
Lele51g0651 656 FunFam ATPase copper transporting beta 34 108 - -
Lele51g0651 656 SUPERFAMILY HMA, heavy metal-associated domain 36 109 IPR036163 GO:0046872
Lele51g0651 656 Pfam Heavy-metal-associated domain 43 102 IPR006121 GO:0046872
Lele51g0651 656 Gene3D - 384 459 IPR023299 GO:0000166
Lele51g0651 656 ProSiteProfiles Heavy-metal-associated domain profile. 39 105 IPR006121 GO:0046872
Lele51g0651 656 PRINTS H+-transporting ATPase (proton pump) signature 559 584 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele51g0651 656 PRINTS H+-transporting ATPase (proton pump) signature 500 516 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele51g0651 656 PRINTS H+-transporting ATPase (proton pump) signature 528 544 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele51g0651 656 Gene3D - 332 583 IPR023214 -
Lele51g0651 656 Pfam haloacid dehalogenase-like hydrolase 361 542 - -
Lele51g0651 656 SUPERFAMILY Calcium ATPase, transmembrane domain M 189 357 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0651 Lele-ChrLele51 3929830 3933889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0651 16 656 Primary Pumps ATPases AT1G63440 54.859 0.0 767
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0632 49 3825305 3826506 Lele51g0651 51 3929830 3933889 hybridization
Lele50g0659 50 4056100 4060458 Lele51g0651 51 3929830 3933889 hybridization