Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0635 ATGGCGACGTCTAGGTCACCAAATCGTTCCTCCGACGACATAGTCGATTCGACGCCGTTCATAGCAAATTCAGGTGGGTCTTCCGATGAATTCAATTCTGGCCGTCGATTTGTTCGCAGGCAGAGCCTGCGCCAAGCTGCTCGGTTCCTGAGGCAGGCCAGTGGCCGTAGGATGATGCGTGAGCCATCGATGTTAGTCAGAGAGACTGCAGCCGAACAATTGGAGGAGAGACAAGGCGATTGGGCTTATTCTAAACCCGTTGTGATCCTTGATGTTATTTGGAACTTCGTCTTTGTTGTGTCGGCTGCTACAGTTTTAATTTTGAGTCGAAGAGAGTCGCCGACCATGCCTTTGAGGCTGTGGATTGTGGGCTACGCTCTGCAATGCATCCTTCACGTTTTCTGCGTTTGCGTTGAATATAAGAGACGGAGGCGGCTCCGGCAGCGCCAGTTTCCACCATCCTTGGACGCAGTGAACGGAAGGGCTGGCAGCAGTGGGAATCTGAGTCTGGGTTCAAGGAATGGTTCTGGGCACTATGTGTCATTGGCGCAATTAAACGAAGAGGGTACAAGCGTAACAAAGCATTTGGAGTCAGCGAACACAATGTTTTCATTTATTTGGTGGATCGTTGGATTTTACTGGGTATCAGCTAGTGGTCAATCTTTAGTCCTTGATTCTCCATTTTTATACTGGCTATGTATAGCTTTCCTGGGTTTTGATGTTTTCTTTGTTGTATTCTGTGTTGCGCTGGCATTCATCATCGGTATTGCTGTATGCTGTTGCCTTCCATGTATTATTGCACTTCTATATGCCGTTGCAGACCAGGAAGGAGCATCAAAAGAAGACATTGAACAGCTGGCTAAGTTTAAATTCCGAAGAGTTGAAAATGATGAGAAACTTGCTGGTAACGCACAAGAACCATTTGGTGGAACAATGACTGAGTGCGGCACTGATTCACCAAGTGAACACATTCTTTCTGGGGAGGATGCTGAATGCTGCATCTGTCTATCTGCTTATGATGATGGTGCTGACCTCAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGACAAGTGGCTGTACATTAATGCTACTTGTCCTCTCTGCAAGTATAACATCTTGAAGAGAAACAACCAAGAGGAAGCATAG 1158 0.4698 MATSRSPNRSSDDIVDSTPFIANSGGSSDEFNSGRRFVRRQSLRQAARFLRQASGRRMMREPSMLVRETAAEQLEERQGDWAYSKPVVILDVIWNFVFVVSAATVLILSRRESPTMPLRLWIVGYALQCILHVFCVCVEYKRRRRLRQRQFPPSLDAVNGRAGSSGNLSLGSRNGSGHYVSLAQLNEEGTSVTKHLESANTMFSFIWWIVGFYWVSASGQSLVLDSPFLYWLCIAFLGFDVFFVVFCVALAFIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLAKFKFRRVENDEKLAGNAQEPFGGTMTECGTDSPSEHILSGEDAECCICLSAYDDGADLRELPCGHHFHCACVDKWLYINATCPLCKYNILKRNNQEEA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0635 385 SUPERFAMILY RING/U-box 324 379 - -
Lele51g0635 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 385 IPR013083 -
Lele51g0635 385 PANTHER TARGET OF ERK KINASE MPK-1 53 381 - -
Lele51g0635 385 MobiDBLite consensus disorder prediction 1 32 - -
Lele51g0635 385 SMART ring_2 332 372 IPR001841 -
Lele51g0635 385 FunFam E3 ubiquitin-protein ligase At1g12760 318 383 - -
Lele51g0635 385 Pfam Ring finger domain 331 373 IPR001841 -
Lele51g0635 385 CDD RING-H2_RNF111_like 331 375 - -
Lele51g0635 385 MobiDBLite consensus disorder prediction 1 31 - -
Lele51g0635 385 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0635 Lele-ChrLele51 3843216 3846312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0635 1 383 C3H Transcription Factor Family AT1G68070 47.150 1.15e-115 338