Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0615 ATGCAATCAGAACCGAGCTTGGGAATGATGGGTGGTGGTTTTAACGGTGACTTAGCTTCCGGTGACCACTTCCTGCTACTCAAGGCGGAGATAGCCAACCACCCTCTCTATGAGCAGCTTCTCGCCGCACACGTCGCTTGCTTACGTGTCGCCACCCCCATCGATCAGCTCCCACTCATCGACGCTCAGTTATCGCAGTCCCACCATATCCTCCGATCATACGCCTCACAGCAAACCCATACCCTTTCACTCCCTGAGCGTCAGGACCTTGACAATTTCCTGGCACAATATTTGTTAGTGTTGTGTACTTTCAAAGAACAGCTTCAACAACATGTCAAAGTCCACGCCGTCGAAGCTGTCATGGCCTGCCGTGATATTGAAAATACCCTACAAGCTCTCACTGGTGTAAGTTTGGGAGAGGGAAGTGGTGCAACTATGTCAGATGATGAGGATGATTTGCCGATGGATTTCTCTTTAGATCAATCTAGCGTTGAAGCTCACGACATGATGGGATTTGGTCCTTTGCTTCCCACGGAATCTGAAAGGTCACTCATGGAAAGAGTTCGTCAGGAACTCAAGATTGAGCTCAAGCAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTAAGGAAAAGAAGAGCAGGCAAGTTACCTGGAGACACGACCTCAGTGTTAAAGAACTGGTGGCAGCAACATTCAAAGTGGCCCTACCCAACTGAAGATGACAAAGCAAAACTAGTGGAGGAGACTGGACTGCAGCTGAAGCAGATCAATAATTGGTTCATAAACCAAAGGAAACGCAACTGGCACAGCAACTCCCAATCAGTCACCTCTTTGAAGTCCAAGCGCAAGAGGACTAGCTTTGGGCAAATGGATCGGACCAAAACAAGTTATTCAGCGCACATAACAGTGATCAGTAGGGTTGTATATGGCGGAGCTGCTTCGCCGAGATCTTGCTTGAAAGAAATTGAAGAGAAGAAGCAGATCCCATCTTTCTCGCAGGAGATGGGCTTCCTAGCTAACGGCGCCTCCGGTGACAAACCCCTCAAGTTCCTGATCTACGGCCGCACCGGCTGGATTGGCGGTCTCCTCGGCAAATTCTGCCAAGCTCAGGGCATCGACTTCGAATACGGCTCCGGCCGCCTTGAGAACCGCCCTTCTTTGGAAGCCGACATCGCTAATGTAAAGCCGACTCACGTGTTCAACGCTGCTGGAGTCACGGGGCGCCCGAATGTTGACTGGTGCGAATCTCACAAGGTCGAGACCATTAGGACCAACGTGGTGGGCACTCTGACCTTGGCCGATGTGTGCAGAGAGAGAGGCCTCATCCTCATCAACTATGCCACTGGCTGCATCTTCGAGTACGACTCCGATCACCTCATCGGATCCGGCATCGGCTTCAAGGAAGAGGACACTCCCAATTTCATCGGATCCTTCTATTCCAAGACCAAGGCCATGGTGGAAGAAATGCTCAAGAACTATGAGAATGTTTGTACCTTGCGCGTCAGAATGCCCATCTCATCGGATTTATCTAACCCACGCAATTTCATCACAAAGATCACTCGATATGAGAAGGTAGTGAATATTCCAAATTCAATGACTATATTGGATGAACTGCTTCCCATTTCGTTAGAAATGGCAAAGAGAAACCTCACTGGCATCTGGAATTTCACAAACCCTGGAGTGGTAAGCCACAATGAAATCTTGGAGATGTACAGGGATTATGTTGATCCCAAATTTGAATGGAAAAACTTTACCCTTGAGGAGCAGGCTAAGGTAATAGTTGCCCCCAGGAGCAACAATGAGCTTGACGCCTCTAAATTGAAGAAAGAATTCCCTGAACTCTTGGATATCAAGGAATCCCTCATTAATAATGTTTTCCAGCCAAATCAGAAGGTGTCCCTCTTCGTTAGTATGTATCGCAAGTGCATTTACTCTGTTGGATTTCTTGATTTGTATTGA 1971 0.4795 MQSEPSLGMMGGGFNGDLASGDHFLLLKAEIANHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHILRSYASQQTHTLSLPERQDLDNFLAQYLLVLCTFKEQLQQHVKVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDDLPMDFSLDQSSVEAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRTSFGQMDRTKTSYSAHITVISRVVYGGAASPRSCLKEIEEKKQIPSFSQEMGFLANGASGDKPLKFLIYGRTGWIGGLLGKFCQAQGIDFEYGSGRLENRPSLEADIANVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRERGLILINYATGCIFEYDSDHLIGSGIGFKEEDTPNFIGSFYSKTKAMVEEMLKNYENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISLEMAKRNLTGIWNFTNPGVVSHNEILEMYRDYVDPKFEWKNFTLEEQAKVIVAPRSNNELDASKLKKEFPELLDIKESLINNVFQPNQKVSLFVSMYRKCIYSVGFLDLY 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0615 656 Pfam KNOX1 domain 27 68 IPR005540 GO:0003677|GO:0005634
Lele51g0615 656 SMART KNOX2_2 80 135 IPR005541 GO:0003677|GO:0005634
Lele51g0615 656 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 343 638 - -
Lele51g0615 656 CDD dTDP_HR_like_SDR_e 353 625 - -
Lele51g0615 656 Pfam Homeobox KN domain 231 270 IPR008422 GO:0003677|GO:0006355
Lele51g0615 656 ProSiteProfiles 'Homeobox' domain profile. 211 274 IPR001356 GO:0003677
Lele51g0615 656 ProSiteProfiles ELK domain profile. 191 211 IPR005539 GO:0003677
Lele51g0615 656 Gene3D - 210 285 - -
Lele51g0615 656 PANTHER DTDP-4-DEHYDRORHAMNOSE REDUCTASE 352 635 IPR005913 -
Lele51g0615 656 SMART HOX_1 213 278 IPR001356 GO:0003677
Lele51g0615 656 CDD homeodomain 214 275 IPR001356 GO:0003677
Lele51g0615 656 SUPERFAMILY Homeodomain-like 213 278 IPR009057 -
Lele51g0615 656 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 350 614 IPR036291 -
Lele51g0615 656 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Lele51g0615 656 Pfam RmlD substrate binding domain 353 525 IPR029903 -
Lele51g0615 656 Pfam KNOX2 domain 86 134 IPR005541 GO:0003677|GO:0005634
Lele51g0615 656 FunFam homeobox protein knotted-1-like 3 isoform X1 212 273 - -
Lele51g0615 656 Gene3D - 344 640 - -
Lele51g0615 656 MobiDBLite consensus disorder prediction 275 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0615 Lele-ChrLele51 3691256 3700415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0615 4 287 Homeobox Transcription Factor Family AT1G62990 78.498 5.14e-164 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele51g0615 RmlD_sub_bind 7.6e-13 CL0063