Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0568 ATGTCATCATCCTCTTCTACTGCCTTACCGCTGGACCACCTCCCTCCTTCCGAGCAGCTTTGTTATGTCCACTGCAACATTTGTGACACTGTCCTCGCTGTGAGTGTTCCTTGCACCAGCTTGTTCAAGACGGTGACGGTGCGATGCGGCCATTGCACAAACCTCCTGCCGGTTAACGTGAACGTGCGTGGATTGCTTCTTCCTTCGGCAAACCAATTTCACTTGAGTCACTCTTTCTACTCTCCATCCCACAATATTCTGGAGCAGATACCAAACCCATCCCCAAATTTCTTAATCAATCAGACCAACTCTTCCAATGACTTCTCTATGCCTTCAAGGACAACAGTTGATGAGCTACCACGCCCGCCCCTCATCAATAAACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCCTACAACCGATTCATTAAGGAGGAAATCCAACGCATCAAGTCTATTAATCCCGATATAACCCACAGAGAAGCCTTCAGCGCAGCTGCCAAGAACTGGGCCCACTTCCCTCACATTCACTTTGGCCTCATGCCTGATCAGACTACGAAGAAGACAAATGGGTGCCAGCAGGAAGGAGACGACGTTCACATGAAAGATGGGTTTTTTGCTTTGGCAAATGTTGGTGTTTCTCCCTACTAG 651 0.4916 MSSSSSTALPLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNVNVRGLLLPSANQFHLSHSFYSPSHNILEQIPNPSPNFLINQTNSSNDFSMPSRTTVDELPRPPLINKPPEKRQRVPSAYNRFIKEEIQRIKSINPDITHREAFSAAAKNWAHFPHIHFGLMPDQTTKKTNGCQQEGDDVHMKDGFFALANVGVSPY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0568 216 Gene3D High mobility group box domain 125 177 IPR036910 -
Lele51g0568 216 SUPERFAMILY HMG-box 123 173 IPR036910 -
Lele51g0568 216 MobiDBLite consensus disorder prediction 101 132 - -
Lele51g0568 216 FunFam Axial regulator YABBY 125 196 - -
Lele51g0568 216 Pfam YABBY protein 16 180 IPR006780 GO:0007275
Lele51g0568 216 PANTHER PROTEIN YABBY 6-RELATED 1 192 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0568 Lele-ChrLele51 3399193 3401445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0568 27 214 C2C2-YABBY Transcription Factor Family AT4G00180 57.416 7.52e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele51g0568 YABBY 2.7e-69 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0972 53 19264716 19267112 Lele51g0568 51 3399193 3401445 CCT
Lele54g0951 54 15898992 15902440 Lele51g0568 51 3399193 3401445 CCT
Lele56g0486 56 3586911 3590271 Lele51g0568 51 3399193 3401445 CCT
Lele51g0568 51 3399193 3401445 Lele51g0568 51 3399193 3401445 ECH
Lele49g0548 49 3310418 3312677 Lele51g0568 51 3399193 3401445 hybridization
Lele50g0579 50 3521317 3523590 Lele51g0568 51 3399193 3401445 hybridization