Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0536 ATGGAGAGGCACAAATGCAAGCTTTGCTCTCGAACGTTCGACAATGGCAGAGCATTAGGTGGTCACATGAAGGCTCACTTGACCTCTTTTCCTCTTCCTCCCAAGCCCCAACCTCTGATCACTCCCTCAGCACCTTCCTTCTCTTATTCCTCTTCTTCTTCCGACGACGACGACGGAGAAGAAGAAGTTGAAGTAGCGCCTGCTTACAACAGAGAACCCGACGACAAGGCTTTGAGTTATGGGTTGAGAGAGAATCCAAGGAAAAATTTCAGGTTCGCAGATCCTGAGTTCTCTTTTGCAGTTGATACTGTCTCCGTCGTCCAAGATAGAGAAAGCGAGACAGAGTCAAAGAATCCGACTCGCCGGCGATCCAAGCGAACCAGAAAATCCGGTGTCGGAGCGAGTCAGAAAATTGAAGTGACCAAGGCCAAGTCAAATTTGACGGAGTCACCAACGGAGCCAGAACCGGTGAGCTCGGTTTCTGATACTTCGCCGGATGAAGATGTTGCTATGTGCCTCATGATGCTTTCCAGGGACAGATGGATGAGAAACGTCGTGGAACAAGATCAAGTGGTGGAGAGATCAAAGGGACCGGAAGAGATCAAGTTGAAGAGGAAGCATCAATCTGATAACACTAAGAAAACTTCTCGATCTTCTCGAGCATTGAACACTCATCGCAATACTACCTACTTTCCTGAAGAAGCAGAGACCAAAATTGCAGAAACAAACACAACCCAAACAATTTATAGTAGTACTATTTATATTGAACACTCGGTGGATGCTGTGGGAGGCGATATGGAAGCTCTAAACAGTTCACATGGATCGGCTCTGAGAGGAAGAGACACGCCATCTCTTATACTTTGGTTGATAATTTACATGCTTGGTCCTCCTCTGGGCGTTGCATGGATGATGGTAGCTTATAGATACACCTTATTAAAAGAAAACGACACTCCTGACTCGGCAGTGGCAAATCTTTTTGCATCTACCAAGAAAAAGGGCATAGAGTTTACCCAGTATGGCCTGCCTCACCACTGCTTGCAGAATCTACCTTCTGAAGGACAAAAGCAGACAACTGCAACTGAGGTACAAAATCTTCTTGTCTCTGGCAAAAAAAGAGAGGCTTTACAATGCGCACAAGAAGGTCAACTGTGGGGACCTGCTCTTGTTCTTGCTTCACAACTTGGTGATCAGTTCTATGTTGATACAGTGAAGCAAATGGCAATTATACAGCTGGTTGCAGGTTCACCTTTGCGAACGTTATGCCTCCTTATTGCAGGTCAACCAGCTGAAGTTTTTTCTACTGGCACCTCAACTAGTGGGTTTTCTGGTGCAGTTAATATGCCTCACCAGCCTGCACAGGCACAGTTTGAATCTAGTGGCATGCTTAATGATTGGGAAGAGAATCTGGCTGTAATAACTGCAAATAGAACAAAAGACGATGAACTTGTGATTATTCATCTTGGAGATTGCCTATGGAAGGAAAGAAGTGAGATTACTGCCGCACACATATGCTATATAGTTGCTGAAGCAAACTTCGAGTCATATTCAGACACTGCTAGACTTTGTCTAATTGGAGCAGATCACTTGGAGTATCCTCGAACTTATGCTAGTCCAGAGGCTATACAGAGGACAGAGCTATTCGAGTACTCGAAAGTGCTTGGAAACTCTCAGTTTATTCTGCTTCCATTTCTGCCATATAAGCTCATATATGCTTATATGCTAGCTGAAGTGGGAAAGGTGTCAGACTCATTGAAGTACTGCCAAGCAGTACTGAAGTCTCTAAAAACTGGACGAGCACCTGAAGTAGAGACATGGAAACAATTTGTATTATCACTTGAGGAGAGGATTAGAACCCACCAACAGGGTGGATATGCTACAAATCTCGCTCCTGCAAAACTAGTGGGTGAAAAGAACAAATTCTATTACGATGAAAAGCTGAAGAGGTGGGTAGAGGAAGGTGCTGAACCTCCAGCTGAAGAAGCTGCATTGCCGCCACCTCCTACAACTGCTTCTTTCCAGAATGGTAATCCTGACTATAACTTGAAATCTGCGTTGAAGACAGAAGGATCTCCTTCTAATGAGGGTCCCGAGTTAAGAACCATGAATACTTCTGAAGATACTTCAGGAATCCCCCCAATACCACCTAGCTCAAATCAATTCTCTGCCCGTGGGCGCATAGGTGTTCGGTCAAGGTATGTTGACACCTTCAACCAAGCTGTTAGCCTGAGTAATCTTGCTTGTGCTGATTTGTGGTGCTTGTAG 2262 0.45 MERHKCKLCSRTFDNGRALGGHMKAHLTSFPLPPKPQPLITPSAPSFSYSSSSSDDDDGEEEVEVAPAYNREPDDKALSYGLRENPRKNFRFADPEFSFAVDTVSVVQDRESETESKNPTRRRSKRTRKSGVGASQKIEVTKAKSNLTESPTEPEPVSSVSDTSPDEDVAMCLMMLSRDRWMRNVVEQDQVVERSKGPEEIKLKRKHQSDNTKKTSRSSRALNTHRNTTYFPEEAETKIAETNTTQTIYSSTIYIEHSVDAVGGDMEALNSSHGSALRGRDTPSLILWLIIYMLGPPLGVAWMMVAYRYTLLKENDTPDSAVANLFASTKKKGIEFTQYGLPHHCLQNLPSEGQKQTTATEVQNLLVSGKKREALQCAQEGQLWGPALVLASQLGDQFYVDTVKQMAIIQLVAGSPLRTLCLLIAGQPAEVFSTGTSTSGFSGAVNMPHQPAQAQFESSGMLNDWEENLAVITANRTKDDELVIIHLGDCLWKERSEITAAHICYIVAEANFESYSDTARLCLIGADHLEYPRTYASPEAIQRTELFEYSKVLGNSQFILLPFLPYKLIYAYMLAEVGKVSDSLKYCQAVLKSLKTGRAPEVETWKQFVLSLEERIRTHQQGGYATNLAPAKLVGEKNKFYYDEKLKRWVEEGAEPPAEEAALPPPPTTASFQNGNPDYNLKSALKTEGSPSNEGPELRTMNTSEDTSGIPPIPPSSNQFSARGRIGVRSRYVDTFNQAVSLSNLACADLWCL 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0536 753 MobiDBLite consensus disorder prediction 654 721 - -
Lele51g0536 753 Pfam C2H2-type zinc finger 3 27 - -
Lele51g0536 753 Pfam Sec23-binding domain of Sec16 362 622 IPR024298 -
Lele51g0536 753 PANTHER RGPR-RELATED 310 635 IPR024880 GO:0006914|GO:0048208
Lele51g0536 753 MobiDBLite consensus disorder prediction 192 225 - -
Lele51g0536 753 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lele51g0536 753 MobiDBLite consensus disorder prediction 105 166 - -
Lele51g0536 753 MobiDBLite consensus disorder prediction 29 79 - -
Lele51g0536 753 MobiDBLite consensus disorder prediction 667 721 - -
Lele51g0536 753 MobiDBLite consensus disorder prediction 64 79 - -
Lele51g0536 753 MobiDBLite consensus disorder prediction 139 165 - -
Lele51g0536 753 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lele51g0536 753 MobiDBLite consensus disorder prediction 192 207 - -
Lele51g0536 753 CDD ACE1-Sec16-like 351 620 - -
Lele51g0536 753 Gene3D - 98 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0536 Lele-ChrLele51 3151947 3166117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0536 2 177 C2H2 Transcription Factor Family AT1G02030 37.696 4.40e-22 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele51g0536 Sec16_C 4e-52 No_clan