LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g0507	ATGCAAACCCACGACGCCATGCCCGGACCCACGAGCTCCCACTCCAACTTAGCCTTTTTGGAATCCATTCGCCGTCACTTGTTCGGTGAATCCGACGCTGCTCCGGCGGCTAAATCCAGTTTCAACATATTGGACCCGTGCCTGAGTCATCATTGGGGCGAATTACCTCTCAGACATGACGACCCCGAAGACATGCTGCTCTTCGGTCTACTCTGGGACGCACTCCAAGACGGATGGGCTCCAACCGTGAACGTTAGCTCACCGGAAAGCGTCTGCTCGACTTTGCCATTCACCGTTACGGTGAAACAGGAGCCGGATGTAGTACAGGTGGCGGCGGCCCCGCAAGAGAAGGTGAAGGAGAAGGTGAGGCATTACCGAGGCGTGCGTCAACGGCCTTGGGGGAAGTTCGCGGCGGAGATCCGAGACCCGGCTAAGAATGGAGCTCGGGTATGGCTGGGGACATTTGAGACGGCGGAGGACGCGGCTCTGGCATACGACCAAGCGGCTTACAAGATGCGGGGCTCGCGGGCTCTGGTTAATTTTCCGCTTAGGGTGAACTCGGGTGAACCGGAGCCGGTGAGAGTGAGGGCGAAGCGGTCTTCAACGGAGGCAATGTCGTCGGGTTCGGAGACTGGAAAGAGAAAGGAGAAGGTGGCAAGGAGGGAAGTCGGAAGTGAAGTGGCAGCTTGTACAAATGGACAACACCTTTTGGTCAGCGAATATGCTTAA	729	0.572	MQTHDAMPGPTSSHSNLAFLESIRRHLFGESDAAPAAKSSFNILDPCLSHHWGELPLRHDDPEDMLLFGLLWDALQDGWAPTVNVSSPESVCSTLPFTVTVKQEPDVVQVAAAPQEKVKEKVRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDQAAYKMRGSRALVNFPLRVNSGEPEPVRVRAKRSSTEAMSSGSETGKRKEKVARREVGSEVAACTNGQHLLVSEYA	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g0507	242	Pfam	AP2 domain	124	174	IPR001471	GO:0003700\|GO:0006355
	Lele51g0507	242	ProSiteProfiles	AP2/ERF domain profile.	124	182	IPR001471	GO:0003700\|GO:0006355
	Lele51g0507	242	CDD	AP2	124	182	IPR001471	GO:0003700\|GO:0006355
	Lele51g0507	242	Gene3D	AP2/ERF domain	123	185	IPR036955	GO:0003700\|GO:0006355
	Lele51g0507	242	FunFam	Ethylene-responsive transcription factor 2	123	183	-	-
	Lele51g0507	242	SMART	rav1_2	124	188	IPR001471	GO:0003700\|GO:0006355
	Lele51g0507	242	MobiDBLite	consensus disorder prediction	195	222	-	-
	Lele51g0507	242	PRINTS	Ethylene responsive element binding protein signature	148	164	IPR001471	GO:0003700\|GO:0006355
	Lele51g0507	242	PRINTS	Ethylene responsive element binding protein signature	125	136	IPR001471	GO:0003700\|GO:0006355
	Lele51g0507	242	PANTHER	DNA-BINDING DOMAIN	102	210	IPR044808	GO:0003700\|GO:0009873
	Lele51g0507	242	SUPERFAMILY	DNA-binding domain	124	184	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g0507	Lele-ChrLele51	2982181	2982909	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g0507	13	238	AP2-EREBP Transcription Factor Family	AT4G17500	48.889	1.22e-70	216

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele51g0507		AP2	3.3e-15	CL0081