Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0492 ATGGGAAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACCCCACTTTGGCGCAATGGCCCGCCAGATAAACCAGTATTATGCAATGCATGTGGTTCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCATTACATGCTCGGACAGAAACTGATGATTGTGAGGATCAAAGGTTTTCAAGGGTAAAGAGCATATCACTAAATAAGAACAAAGAAGTGAAATTGTCTAAACGAAAGCATAATGAAGATAATTTATTAACTGGAGTGGCTGGCCTTGATTACAACCAAGGGTTTCGAAAGGCTGCAGATGAAGATACAAGCAATAGATCAAGTTCTGGATCAGCTATCTCTAACTCAGAGAGTTGTGCTCAACTTGGTGGCACTGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAATTGTCTGGGATACCATGGTGCCTTCAAAGAAGAGGACATGTGTGGGTCGTCGAAAGCAATCTTCTGTTGAGAAGCTTACAAAAGATCTGTACACTATTCTTCATGAACAACAGTCTTATTTTTCTGCATCCTCTGAAGAGGATCTTCTTTTTGAAACTGAAACACCAATGGTCTCTGTTGAGATAGGGCATGGAAGCGTTCTTATTAGGCACCCAAGCTCTATAGCTCGGGAAGAAGAGTCTGAGGCCAGCTCTCTTTCAGTTGATAACAAACAGTGCCCAACCAGTGAGGCATATTCATATTCTGGTACCGCTCATGTGCATAATGGTTATAGAGGTGGGGTTCAAAAGATCAGGAGCTCTGCTGGCCAAGGAATGCTGCAAGAGCAACTTAAGAGGCAAGTTCTTTGGGCACTAGATGTCATTAACTATGATGAATTTATGAGGACCTTGACAAATGAAGAGCAGCAACAGTTACTCCAGTGTGTCACTGCGGTTGATACTACTAAACTTCCTGATAGGTTAGAATCTGTTCATCTATATTTGATGTCTGTTTTACATGTTTTCATCAAACAGTTTCGATGTTGTTTCCTGAAAAGCATGTTTAGTAGCTCTCAATTCAAGGAGAACTTGAATTATTTTCAGCAGCTTCTTGCAGAAGGTGTCTTTGATATCTCCTTATCAGGGACAAAACCTGAAGACTGCAAGACTTTGAAAAGGCTCGCATTATCCAATCTGTCAAAATCAAAATGGGTGGAACATTATAACTTACTTAAGAAAAATAAGAACAGAGCTGGAAAATCTGTTGCTTCGGGTTCTTCTGGCACTGCATCTAGTAATGCTGCAAGTGTCAAGAGATGTCATGATAGCCAAAGTAAAAATTTATCAGAAATGAAGACAACAATGAGGAGTCCTAAAAGGGTGATGATGAAGGTTGTCTGTGAGGGCAAGGAAGCTGAAGAATATGGTTCTTGTTTCAGTCCAAAAAGCCTATTTGCTTTGCCTTCTGATGGTGAGGCCCTCCTGCTGGACTCTTTCACTTTTGTCGAGGAGGGCGGTGATCAGGACCTGCTGCTCGAGGTGCCATCCAACGGTTCTTTTCCCGAGGCAGAGCTCATGCACCCAACCTTAAGCTTTGGTGCTCTCAGCACCAGTAGTAGCTCATGTTTTGTTGTCGTCGGGGAAGTAACTTGTGTTTCTCTCCTGGGAACTCGTCTTTGA 1647 0.4268 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARTETDDCEDQRFSRVKSISLNKNKEVKLSKRKHNEDNLLTGVAGLDYNQGFRKAADEDTSNRSSSGSAISNSESCAQLGGTDASDLTGPAQSIVWDTMVPSKKRTCVGRRKQSSVEKLTKDLYTILHEQQSYFSASSEEDLLFETETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQCPTSEAYSYSGTAHVHNGYRGGVQKIRSSAGQGMLQEQLKRQVLWALDVINYDEFMRTLTNEEQQQLLQCVTAVDTTKLPDRLESVHLYLMSVLHVFIKQFRCCFLKSMFSSSQFKENLNYFQQLLAEGVFDISLSGTKPEDCKTLKRLALSNLSKSKWVEHYNLLKKNKNRAGKSVASGSSGTASSNAASVKRCHDSQSKNLSEMKTTMRSPKRVMMKVVCEGKEAEEYGSCFSPKSLFALPSDGEALLLDSFTFVEEGGDQDLLLEVPSNGSFPEAELMHPTLSFGALSTSSSSCFVVVGEVTCVSLLGTRL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0492 548 MobiDBLite consensus disorder prediction 103 133 - -
Lele51g0492 548 MobiDBLite consensus disorder prediction 408 443 - -
Lele51g0492 548 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Lele51g0492 548 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lele51g0492 548 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Lele51g0492 548 MobiDBLite consensus disorder prediction 110 133 - -
Lele51g0492 548 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lele51g0492 548 MobiDBLite consensus disorder prediction 405 443 - -
Lele51g0492 548 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Lele51g0492 548 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Lele51g0492 548 PANTHER OSJNBB0038F03.10 PROTEIN 1 520 IPR044589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0492 Lele-ChrLele51 2888962 2896415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0492 1 516 C2C2-Gata Transcription Factor Family AT4G17570 49.283 7.55e-149 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele51g0492 GATA 6.5e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0313 53 2624880 2626457 Lele51g0492 51 2888962 2896415 CCT
Lele54g0309 54 2632903 2634486 Lele51g0492 51 2888962 2896415 CCT
Lele55g1177 55 18403073 18404653 Lele51g0492 51 2888962 2896415 CCT
Lele56g1127 56 14763932 14765512 Lele51g0492 51 2888962 2896415 CCT
Lele49g0476 49 2841410 2843437 Lele51g0492 51 2888962 2896415 hybridization
Lele50g0508 50 3020865 3025865 Lele51g0492 51 2888962 2896415 hybridization