Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0488 ATGCCAGGTGTACGCTTCACAGACTCCAGAGCCACCTTTTATAGTACCTCCGATGGCAATGGGACCCCAACCGGAGCTTGTGGATATGGAGATTACGGCAGCACTGTGAACTCTTGGAGGGTTACAGGCGTGTCTGGCTTATGGAGAGGTGGCGCTGGATGCGGTGCTTGCTACCAAGTAAGGTGCAAGAATTCAAGATTATGCGATGACTACGGCACGATGGTGGTGGCCACAGACTACGGTGCTGGAGACAGAACAGACTTCATAATGAGTCCAAAGGGTTTCTCAAAAATGGGACGAGACACACTTGCATCAGACGTGCTCAAGGGATTCGGCGTACTAGACATCGAATACAGGAGGGTACCCTGCATTTATGATGGCTACAACGTGAAGATTAAAATCCACGAGTCAAGCAATTACCCAGAGTACCTTGCTATTGTCCTTCTCTACGTGCCTGGAATGAACGACATCACTGCCATTGAGATATATGACAATGATTGCCATGAATGGAAGCCTATGAGAAGAGTATATGGGGCAGTGTTTGATATAGTGGGCGCACCAAGTGGACCATTGATGCTGAGGCTGCAATTCAGTGGAAGAACTGGTTGGGTTCAGTCGTCCAAGAGCTCTATTCCTGGAGATTGGAAGATTGGAGCTTCTTATGACTCTCAAGTTCATGTCTAA 684 0.4825 MPGVRFTDSRATFYSTSDGNGTPTGACGYGDYGSTVNSWRVTGVSGLWRGGAGCGACYQVRCKNSRLCDDYGTMVVATDYGAGDRTDFIMSPKGFSKMGRDTLASDVLKGFGVLDIEYRRVPCIYDGYNVKIKIHESSNYPEYLAIVLLYVPGMNDITAIEIYDNDCHEWKPMRRVYGAVFDIVGAPSGPLMLRLQFSGRTGWVQSSKSSIPGDWKIGASYDSQVHV 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0488 227 Gene3D - 125 227 IPR036749 -
Lele51g0488 227 PANTHER EXPANSIN-B3 9 226 - -
Lele51g0488 227 PRINTS Expansin/Lol pI family signature 170 184 IPR007118 GO:0005576
Lele51g0488 227 PRINTS Expansin/Lol pI family signature 5 20 IPR007118 GO:0005576
Lele51g0488 227 PRINTS Expansin/Lol pI family signature 111 127 IPR007118 GO:0005576
Lele51g0488 227 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Lele51g0488 227 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Lele51g0488 227 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 24 128 IPR007112 -
Lele51g0488 227 SUPERFAMILY Barwin-like endoglucanases 6 126 IPR036908 -
Lele51g0488 227 Pfam Expansin C-terminal domain 130 207 IPR007117 -
Lele51g0488 227 Gene3D - 3 123 IPR036908 -
Lele51g0488 227 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 142 223 IPR007117 -
Lele51g0488 227 Pfam Lytic transglycolase 42 116 IPR009009 -
Lele51g0488 227 SUPERFAMILY PHL pollen allergen 129 223 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0488 Lele-ChrLele51 2875795 2877412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0488 6 225 Expansin Gene Family AT4G17030 51.570 3.19e-77 231