Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0487 ATGGAACTTCATTCTAAATACCAAGTTGGCCTTGCTTGCGTGCTGCTTCTCCTACCCGCACTATGTCTATCCCAAGGGTTCACAGACTCCAGAGCCACCTATTATAATACCCCCGATGGCTATGGAACTCCAACCGGAGCTTGTGGATATGGAGATTACGGCAGAACTGTGAACTATGGGATGGTTGCAGGCGTGTCTGGCTTATGGAGAGGTGGCGCTGGATGCGGTGCTTGCTACCAAGTAAGGTGCAAGAATTCAAGGTTATGCAATAACTATGGAACGATGGTGGTGGCAACAGACTACGGTGCAGGAGACAGAACAGACTTCATAATGAGTCCAAATGCTTTCTCAAAACTGGGACGAACTCCAAGTGCATCGGACGAGCTCAGGAAACAGGGCACCGTTGACATCGAATACAGGAGGGTACCCTGCACATATGCAGGCTACAACGTGCGTATCAAGATCCACGAGTCCAGCAATTACCCTCACTACCTTGCTCTTGTTATTCAATACGTACCTGGCATGAGCGACGTCACTGCCGTTGAGATTTATGATAATGATAGCCATCAATGGAAGCCAATGAGAAGATCGTACGGGGCAGTGTTTGATATCGTTGGCGCACCAAGTGGACCATTGAAGCTGAGGCTGCAATTCAATGGAAGAACAGGTTGGGTTCAGTCCACCAAGAGTGCAATTCCTAAGGATTGGAAGATTGGAGCTTCTTACGACTCTCAAATGGAGCTTCATTCTAAATACCAAGTGGCCTTTGTTTGTGTGCTGCTTTTGCCTGCACTATGCTTATCCCAAGGCTTCACAGACTCCAGAGCCACCTTTTATAGTAGCCCAGATGGCAAAGGAACTTCAACCGGAGCTTGTGGATATGGAGATTACGGCAGAACTGTAAACCATGGTATGGTTGCCGGCGTGTCCGGGTTATGGAGAGGTGGCGCTGGATGTGGAGCTTGCTACCAAGTAAGGTGCAAGAATTCAAGATTATGCGATAACTACAGCGCGATGGTAGTGGCAACAGACTACGGTGCAGGAGACAGAACAGACTTCATAATGAGTCCCATTGCTTTCTCAAAACTGGGACCAAACCCAAGTGCATCGGCGGAGCTCAAGAAATATGGCGTTGTAGACATTGAATAA 1149 0.483 MELHSKYQVGLACVLLLLPALCLSQGFTDSRATYYNTPDGYGTPTGACGYGDYGRTVNYGMVAGVSGLWRGGAGCGACYQVRCKNSRLCNNYGTMVVATDYGAGDRTDFIMSPNAFSKLGRTPSASDELRKQGTVDIEYRRVPCTYAGYNVRIKIHESSNYPHYLALVIQYVPGMSDVTAVEIYDNDSHQWKPMRRSYGAVFDIVGAPSGPLKLRLQFNGRTGWVQSTKSAIPKDWKIGASYDSQMELHSKYQVAFVCVLLLPALCLSQGFTDSRATFYSSPDGKGTSTGACGYGDYGRTVNHGMVAGVSGLWRGGAGCGACYQVRCKNSRLCDNYSAMVVATDYGAGDRTDFIMSPIAFSKLGPNPSASAELKKYGVVDIE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0487 382 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 244 IPR007117 -
Lele51g0487 382 PANTHER EXPANSIN-B3 17 246 - -
Lele51g0487 382 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Lele51g0487 382 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Lele51g0487 382 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Lele51g0487 382 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Lele51g0487 382 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Lele51g0487 382 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 289 382 IPR007112 -
Lele51g0487 382 SUPERFAMILY Barwin-like endoglucanases 257 382 IPR036908 -
Lele51g0487 382 SMART dpbb_1 61 139 IPR007112 -
Lele51g0487 382 SMART dpbb_1 305 376 IPR007112 -
Lele51g0487 382 Pfam Lytic transglycolase 62 139 IPR009009 -
Lele51g0487 382 Pfam Lytic transglycolase 306 375 IPR009009 -
Lele51g0487 382 Gene3D - 20 144 IPR036908 -
Lele51g0487 382 Gene3D - 145 245 IPR036749 -
Lele51g0487 382 SUPERFAMILY PHL pollen allergen 150 244 IPR036749 -
Lele51g0487 382 Gene3D - 267 382 IPR036908 -
Lele51g0487 382 Pfam Expansin C-terminal domain 151 233 IPR007117 -
Lele51g0487 382 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Lele51g0487 382 SUPERFAMILY Barwin-like endoglucanases 14 148 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0487 Lele-ChrLele51 2868981 2873026 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0487 259 382 Expansin Gene Family AT4G17030 52.800 4.78e-37 133