Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0485 ATGGAGCTTCATTATTCTAAATACCAAGTGGCCCTTGTTTGTGTGTTGCTCTTGCCTGCACTATGCATTTCCCAATTCACAGACTCCAGAGCCACCTTTTACACTACCTCCGATGGCATGGGAACCCCAACTGGAGCTTGTGGTTTTGGCGATTACGGCAGAACTGAAAACAACGGGATGGTTACCGCCGTGTCTGGACTATGGAGAGGTGGCGCCGGATGCGGTGCCTGCTACCAAGTAAGGTGCACGGATACAAAATTATGCAGTACGAACGGGGCAACGGTGGTGACAACAGACATGGGTTCAGGAGACAGAACAGACTTCGTTTTGAGTCTGAACGGCTTCGTGAAACTGGGATTGAACTCAAGTGCAACGGAAGAGCTCAAGAAAAAGGGCACCATTGACATCCAATACAGGAGGTTCCCATGCACATTTGATGGCTCCAACGTCAAGATCAAGATCAACGAGAACAGCAGATTCCCAGACTACCTTGCTATCGCCGTTATCTACGTGCCCGGATCCAAGGACGTCGTTGCCGTTGAGATCTCCAACAATGATGGGAGAGACTGGAAGGCAATGAGAAGAGTGTTTGGGGGAGCGTTTGATATAACAAATGCGCCACGTGGACCATTCAAGGTGAGGGTGCAATTCAGTGGGAGCCAATCTTGGGTTGTGTCACCCAACAATGTTATTCCTGCCGATTGGAAGGTCGGAGCTATTTATGACTCTGGAATCCGTGACTAA 744 0.496 MELHYSKYQVALVCVLLLPALCISQFTDSRATFYTTSDGMGTPTGACGFGDYGRTENNGMVTAVSGLWRGGAGCGACYQVRCTDTKLCSTNGATVVTTDMGSGDRTDFVLSLNGFVKLGLNSSATEELKKKGTIDIQYRRFPCTFDGSNVKIKINENSRFPDYLAIAVIYVPGSKDVVAVEISNNDGRDWKAMRRVFGGAFDITNAPRGPFKVRVQFSGSQSWVVSPNNVIPADWKVGAIYDSGIRD 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0485 247 Gene3D - 145 246 IPR036749 -
Lele51g0485 247 Pfam Expansin C-terminal domain 150 232 IPR007117 -
Lele51g0485 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Lele51g0485 247 SUPERFAMILY Barwin-like endoglucanases 13 147 IPR036908 -
Lele51g0485 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Lele51g0485 247 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Lele51g0485 247 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Lele51g0485 247 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Lele51g0485 247 Pfam Lytic transglycolase 67 138 IPR009009 -
Lele51g0485 247 Gene3D - 20 144 IPR036908 -
Lele51g0485 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 243 IPR007117 -
Lele51g0485 247 SUPERFAMILY PHL pollen allergen 149 243 IPR036749 -
Lele51g0485 247 PRINTS Major pollen allergen Lol pI signature 82 92 IPR005795 GO:0005576|GO:0019953
Lele51g0485 247 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Lele51g0485 247 PRINTS Major pollen allergen Lol pI signature 153 168 IPR005795 GO:0005576|GO:0019953
Lele51g0485 247 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576|GO:0019953
Lele51g0485 247 PRINTS Major pollen allergen Lol pI signature 219 236 IPR005795 GO:0005576|GO:0019953
Lele51g0485 247 PANTHER EXPANSIN-B3 15 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0485 Lele-ChrLele51 2855356 2856731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0485 15 245 Expansin Gene Family AT4G17030 46.809 2.18e-71 217
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0465 49 2797409 2800853 Lele51g0485 51 2855356 2856731 hybridization
Lele50g0504 50 2999266 3000761 Lele51g0485 51 2855356 2856731 hybridization