Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0475 ATGAGCTTATTTCCGCATCTCTCCACAGAAGAGATTCCGAATATGGCAAATTGCAGTGCATCTAAGTCTGTCACCAAGGAACCTAGAGCTGCACAGATGACAATCTTTTATGGTGGGCAAGTTGTCTTGTTCGATGATTTTCCTGCCGAAAAATTCATGGAGATCACGGCGTTTGCCAGCAAAGGAACATCCCCTGTACAGAACTGCTTTGCTTATGCTTTTCCTCAGAACCAGCCATCGTTTCCTCATAATTCAACTAGATTTTCTTCTGATTCCCAAGGGCCAGTTTCTCCTAATATTTGCAGCACTTTAGTTCAAGGGCGCCCTCAGTCACCATCTGGACCTGTGGTTGCTGACCTTCCGATTGCTAGGAAAGCTTCACTTCATCGGTTCTTAGAGAAGAGGAAGGACAGGATTGCTGCTAGAGCACCGTATCAAACAAGCAGCCCGATGGCGGCTCCAAATAAGTCAACCGAATCTATGACATTGCTTGAATTGGCTGCAAAGTCGTCCCACATCTGA 522 0.4617 MSLFPHLSTEEIPNMANCSASKSVTKEPRAAQMTIFYGGQVVLFDDFPAEKFMEITAFASKGTSPVQNCFAYAFPQNQPSFPHNSTRFSSDSQGPVSPNICSTLVQGRPQSPSGPVVADLPIARKASLHRFLEKRKDRIAARAPYQTSSPMAAPNKSTESMTLLELAAKSSHI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0475 173 Pfam tify domain 28 54 IPR010399 -
Lele51g0475 173 SMART tify_2 26 61 IPR010399 -
Lele51g0475 173 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 19 156 IPR040390 -
Lele51g0475 173 Pfam Jas motif 121 146 IPR018467 -
Lele51g0475 173 ProSiteProfiles Tify domain profile. 26 61 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0475 Lele-ChrLele51 2798070 2798901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0475 7 169 Tify Gene Family AT1G19180 40.000 1.56e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele51g0475 tify 5.4e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0457 49 2749960 2751305 Lele51g0475 51 2798070 2798901 hybridization
Lele50g0493 50 2920934 2922306 Lele51g0475 51 2798070 2798901 hybridization