LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g0466	ATGTATAGCGGCACGGGTGTGGCAGGAAGAACTCGATCTAGACAAGGAATCACGGGAAAACAATACTTTGAGAATAAGTGTAGGAAACAGCATGAGGTTGAGGGAATTGCATCTCAAGAAGAATGGTGCTCTATTGATACTGTATCTGACGATGGTGACGATGACGATGTGATTTTGATCGAAGACACTATACCAGATGATGAAGCCACTATATCAGATGATGAAGACACTATATCAGATGATAACAGTGAGGAGGACTCGGGAAGAACTCAGCCTAGACAATCACTTATTGAGAAGGGTGATGAAATTGGGTCTCAAGAAGAAAAGTGTTCAATCGACACTGGTTCTTCTGATGGTGGTGTTGACTTGTTTTCAATTGAACATGGTGAAGATGATGAAGCTATACCGCATGGTGACGATGACGGCAGGAAGAGCAGGTATATTGCTGGGAGAACACGATCCCATTTTCGTCCTTCAAAATTTAGAAACACCAAAGCAGGGACATTTAGCAATCCCCTTTGCCTTGACAATGAGGAAGAGGAGAATGAAACAATAAGAAGTTGCAACCTCATCGGTCAGGAGTCTCTCCACAATGTTCAAAGAATTCCAAAAGTTACCCTTAAACGGAGAAGAAAAGTGTTTGATGGTTTCAAGATTCTTCCGGAGCATCTCCATGGTGAGGGAGCGATGCTTCTTGAGAACTCCGCTTCCACAAGTGGTGAGGAAGAAAATCCGAAAGTTATGAGGAAGCGACTTGAGGTGTCACAGCCACTAGACAAATTAGAGTCTGACAATGAATTAGATGTACTATGGCGTGAGGCCAACAAATGTCGCCGTGATTGCGATGATGAGGACGGAATTCCAGAAGTAACCAAGACATCTCAATCATCAAAGTGTACTCTTGGGACTAAGGCATCACAGCCTCTAGAGAAATTAGAGTCTGAGAATGAATTAGATGTATTATGGTGTGAGATGGCCGAAGCTCTCCGTAATGAGGGCAGAATTCCAGAAGTGACCAAGACATCTCTGTCATCAAAATGTACTCTTGTGACTAAGGCGTCACAGCCTCTTGAGGAATTAGAGTCGGAGGAAGAATATCTATGGGATGAGATGGACAGGTGTCTTCAAAGTTGTAAAGAAGATAATTCTGTTGAGGTTGAAAATGGTGAATTTGAAGACCCATGTCCTGAAGGTGAAGTTAGTGTAGCTACTCGTTGTGCACGAGGGGATCATGATCTTATAGAGAACGATGAAATTGGCGAATTTTGCAAACATTGCCTACATTTGACTCGGGAAATTAAATATATTGACCCACAGTTTGGAAAAAATCCATCGGGAAAATCACGTTGGAGATACTCTCCCCGTTCGGAGGATGCCGACGACTCTCTTTCTAGTGACCCTGAGCATGAAAGTTCTGGTTGTGATGATAACTCTTCCGGGTCTGTTACCTATACTTCCACTGGAACTGTGTGGGATATAATTCCAAGAGCGAAAAGGAGTATGTACGATCATCAACAAGAAGCTTTTAAATTTCTTTGGACCAACTTAGCTGGTGGACTATTTCTTGACGAGTTGGAAAAGCAGTTAGATTTTGCTGGTGGAAGTGGCTGCATTATATCACATGCTCCTGGCACAGGCAAAACTTTCCTGACCATTGTCTTTCTCAGGGCTTTCATGAGCAGATATCCAAATTGCAGACCCATGATCATAGCTCCAACCAACATTCTTCACACATGGGAGAAAGAGTTAAAGAAGTGGGAGAAAGTAGGCGTTCCTGTTCCTTTTCACAATTTGAACAAGCCAGATCTCTCCGGAGAGGAGACTGAATCTGCCATTATCCGTCTTCGGAGGCACGGTGGTCGTCGTCGTCGTCATGGTGCACACAAGAAGATTGAAATCCGTGGGGCGAAGGTCTATTCCTGGAAAGAGGCTACTAGCATCTTAGGAATTAGCTACAATTTGTTTGATAGGCTTTCTAGAAAGGGCTCTGATGATGTAAAGAAAGCCCTTTTTGAACTCCCAGGGTTAGTAGTTCTTGATGAAGGTCACACCCCTCGCAATGATAGGAGTCTCATATGGGAAGCCTTGTCAAAGATTAAGACAAAGAGACGCATCATACTCTCCGGTACCCCTTTCCAAAACAATTTCAAGGAGCTTTACAATACACTCCGCTTGGCCAAGCCAAGATTTGTAGAATTGAAGCAGGGTACCAGATGGAATTTGGAATTTCTGCTAAAATCTTATGACAGAGTGGATAGTGATAGGGAAAAAACTCAGGTAATTGCCAAAATCAGAGATGTGATCAAACCATTTGTGCATGTGCATAAGGGTACCGTACTACAAGAGAGTCTTCCTGGGTTGATGGAATCGGTGATTAGTTTAAATCCATCCCAGACGCAGATGTCAGTTTTTGATTACATTCAGCAGTTAAGGAGGACCCAACTTCAGGGCAAAGAGGGACCCTCTACCTGGTTCAAATTTGAACATTTGATGTCTGTAGCTTCTGTGGATCCTTCGCTTCTTGTTGCTGAGCTCACTAACTTAACAGAAAGAGAAAGAGCAAAATTGAATGCTATATTAGAAAGACTAGAATCGTCCCAAGAGGATGGAGTGAAAACCAAGTTTGTTATGGACTTCATCCGGCAAAGCCAGCTCATGAAGGAAAAAGTTCTGATTTTTAGTCAATATGTTGCTCCACTGGTCTTTCTGGCAAACCGGATCAAATCTCGCTTTGATTGGAAAGAAGGGGAACAAATGATGGTAATTCATGGAAAGACCCATGAAGTGATACGTCAAGCGTGGATAGACGCATTCAATGATCCCAGAAGCAAAGCGAGGGTAATGCTAGCATCAACCAAGACATGTTATGAAGGGATCAATCTGGTTGGTGCTTCAAGGGTTATTTTGCTGGATACGTTATGGAATCCCTCAGCAGAAAGGCAGGCTGTGTCTCGCGCTTATCGGATTGGACAGAAGAAAATTGTGTACACTTACCGGCTGATAACGGCAGGGACATGGGATCAACAGAAGCTTTATATTCAAGCTGAGAAGGATCAGTTGTCCGAGATGGTGTTTTTCGGTTCCAATGAAGCTGGCCATCGCCAGAATACCTCACCTGTTGGTCTTGAAGATAAGCTTTTGGAAAAGATGGGACGTCAATTTGCAACAAAAATCACTAAGAGAGGAGTTACAATTTTGTTTGAAAGTGAAAAGTAG	3216	0.431	MYSGTGVAGRTRSRQGITGKQYFENKCRKQHEVEGIASQEEWCSIDTVSDDGDDDDVILIEDTIPDDEATISDDEDTISDDNSEEDSGRTQPRQSLIEKGDEIGSQEEKCSIDTGSSDGGVDLFSIEHGEDDEAIPHGDDDGRKSRYIAGRTRSHFRPSKFRNTKAGTFSNPLCLDNEEEENETIRSCNLIGQESLHNVQRIPKVTLKRRRKVFDGFKILPEHLHGEGAMLLENSASTSGEEENPKVMRKRLEVSQPLDKLESDNELDVLWREANKCRRDCDDEDGIPEVTKTSQSSKCTLGTKASQPLEKLESENELDVLWCEMAEALRNEGRIPEVTKTSLSSKCTLVTKASQPLEELESEEEYLWDEMDRCLQSCKEDNSVEVENGEFEDPCPEGEVSVATRCARGDHDLIENDEIGEFCKHCLHLTREIKYIDPQFGKNPSGKSRWRYSPRSEDADDSLSSDPEHESSGCDDNSSGSVTYTSTGTVWDIIPRAKRSMYDHQQEAFKFLWTNLAGGLFLDELEKQLDFAGGSGCIISHAPGTGKTFLTIVFLRAFMSRYPNCRPMIIAPTNILHTWEKELKKWEKVGVPVPFHNLNKPDLSGEETESAIIRLRRHGGRRRRHGAHKKIEIRGAKVYSWKEATSILGISYNLFDRLSRKGSDDVKKALFELPGLVVLDEGHTPRNDRSLIWEALSKIKTKRRIILSGTPFQNNFKELYNTLRLAKPRFVELKQGTRWNLEFLLKSYDRVDSDREKTQVIAKIRDVIKPFVHVHKGTVLQESLPGLMESVISLNPSQTQMSVFDYIQQLRRTQLQGKEGPSTWFKFEHLMSVASVDPSLLVAELTNLTERERAKLNAILERLESSQEDGVKTKFVMDFIRQSQLMKEKVLIFSQYVAPLVFLANRIKSRFDWKEGEQMMVIHGKTHEVIRQAWIDAFNDPRSKARVMLASTKTCYEGINLVGASRVILLDTLWNPSAERQAVSRAYRIGQKKIVYTYRLITAGTWDQQKLYIQAEKDQLSEMVFFGSNEAGHRQNTSPVGLEDKLLEKMGRQFATKITKRGVTILFESEK	1071

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g0466	1071	Gene3D	-	785	1070	IPR027417	-
	Lele51g0466	1071	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	492	749	IPR027417	-
	Lele51g0466	1071	MobiDBLite	consensus disorder prediction	62	82	-	-
	Lele51g0466	1071	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	675	1031	IPR027417	-
	Lele51g0466	1071	MobiDBLite	consensus disorder prediction	62	124	-	-
	Lele51g0466	1071	MobiDBLite	consensus disorder prediction	451	473	-	-
	Lele51g0466	1071	SMART	helicmild6	901	990	IPR001650	-
	Lele51g0466	1071	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	356	1053	IPR044567	GO:0080188
	Lele51g0466	1071	Gene3D	-	478	773	IPR038718	-
	Lele51g0466	1071	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	528	729	IPR014001	-
	Lele51g0466	1071	MobiDBLite	consensus disorder prediction	83	108	-	-
	Lele51g0466	1071	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele51g0466	1071	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	855	1046	IPR001650	-
	Lele51g0466	1071	MobiDBLite	consensus disorder prediction	440	481	-	-
	Lele51g0466	1071	Pfam	Helicase conserved C-terminal domain	875	990	IPR001650	-
	Lele51g0466	1071	SMART	ultradead3	497	734	IPR014001	-
	Lele51g0466	1071	Pfam	SNF2-related domain	534	819	IPR000330	GO:0005524\|GO:0140658
	Lele51g0466	1071	CDD	SF2_C_SNF	872	1001	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g0466	Lele-ChrLele51	2748397	2752781	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g0466	888	1036	RAD5 or RAD16-like Gene Family	AT1G11100	34.228	2.87e-15	79.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Lele51g0466		SNF2_N	2.4e-26	CL0023