LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g0464	ATGAGGTGCTTCTTGTTCAAATCTAAAAGAGGATCAAAATCCTCCTCAGAATCGCAGAAACAGAGACAGGATAATCATCCGGGTTCAAATCACGCGGTGAGTTCAACGAGTTCGCTGCCATCGCCGAGAACCTTAACAGAATTGTACAAAGAGAAAGAGCACAATTTGAGAGTTTTCACTTCGCAAGAGCTCAGAGAGGCCACGAATGATTTCAATAGGAGGCTGAAGATTGGAGAGGGCGGTTTCGGGAGCGTTTATAAAGGTACAATTAGGTCTCAAGATGGTCAAGGCGATCCTATTGTTGTTGCGATAAAAAGACTCAACACCCGTGGCTTTCAGGGGCATAAACAATGGCTGGCAGAGGTTCAATTTCTGGGAATTGTTAATCACCCAAATTTGGTAAAACTATTGGGATACTGCTCTGAAGATGGAGAAAGAGGGATCCAACGGCTGTTAGTTTATGAGTTCATGCCCAACAAGAGCCTGGAGGATCATCTTTTCAGACGGGATATTCCCACCTTGCCGTGGAAAACAAGATTGAAGATCATGCTCGGAGCTGCCCAAGGATTAATTTATCTACACGAGGAATTAGAGATTCAGGTAATATACCGAGATTTCAAATCTTCCAATGTTTTATTGGACACGAACTTCCATCCAAAGCTTTCAGATTTTGGTCTCGCTAGGGAAGGTCCAATTGGTGATAAGACTCACGTGTCCACTGCGGTGGTCGGGACACATGGATATGCTGCCCCAGAATATATAGAAACAGGCCACCTCAAAGTTCAGAGTGATATATGGAGTTTTGGTGTGGTATTATATGAGATGCTTACAGGGAGGCGATCATTAGATAGAAGACGACCGAAAGAACAGAAGCTTCTAGATTGGGTTAAACAGTATCCTGCCGATAGTAGGAGGTTCAGCATGATAATGGACCCTCGTCTCAGAAATGAGTATTCACATGGTGCTGCTCGGAAAGTAGCCAAGTTGGCAGACAGATGCTTAAACAATAAACCTGAAGAAAGGCCATCCATGAGACAGGTAGTGGAAAGCTTGAAGCAAGCATTGCGGTATTCAGAAACTTCAAAAATGGCTTCTGAATCGTCTCGACCTAAATTGGTTCCAATAAGCAAGTAG	1134	0.4383	MRCFLFKSKRGSKSSSESQKQRQDNHPGSNHAVSSTSSLPSPRTLTELYKEKEHNLRVFTSQELREATNDFNRRLKIGEGGFGSVYKGTIRSQDGQGDPIVVAIKRLNTRGFQGHKQWLAEVQFLGIVNHPNLVKLLGYCSEDGERGIQRLLVYEFMPNKSLEDHLFRRDIPTLPWKTRLKIMLGAAQGLIYLHEELEIQVIYRDFKSSNVLLDTNFHPKLSDFGLAREGPIGDKTHVSTAVVGTHGYAAPEYIETGHLKVQSDIWSFGVVLYEMLTGRRSLDRRRPKEQKLLDWVKQYPADSRRFSMIMDPRLRNEYSHGAARKVAKLADRCLNNKPEERPSMRQVVESLKQALRYSETSKMASESSRPKLVPISK	377

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g0464	377	FunFam	Serine/threonine-protein kinase BIK1	38	156	-	-
	Lele51g0464	377	ProSitePatterns	Protein kinases ATP-binding region signature.	77	105	IPR017441	GO:0005524
	Lele51g0464	377	MobiDBLite	consensus disorder prediction	21	42	-	-
	Lele51g0464	377	SUPERFAMILY	Protein kinase-like (PK-like)	53	351	IPR011009	-
	Lele51g0464	377	ProSiteProfiles	Protein kinase domain profile.	71	355	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele51g0464	377	CDD	STKc_IRAK	77	353	-	-
	Lele51g0464	377	Pfam	Protein kinase domain	74	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele51g0464	377	Gene3D	Transferase(Phosphotransferase) domain 1	157	373	-	-
	Lele51g0464	377	MobiDBLite	consensus disorder prediction	6	42	-	-
	Lele51g0464	377	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	201	213	IPR008271	GO:0004672\|GO:0006468
	Lele51g0464	377	MobiDBLite	consensus disorder prediction	358	377	-	-
	Lele51g0464	377	Gene3D	Phosphorylase Kinase; domain 1	44	156	-	-
	Lele51g0464	377	PANTHER	OS01G0588500 PROTEIN-RELATED	23	353	-	-
	Lele51g0464	377	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	157	366	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g0464	Lele-ChrLele51	2732149	2733962	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g0464	3	351	Glycoside Hydrolase	AT3G07070	41.944	1.11e-91	280

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Lele51g0464		Pkinase	5.5e-49	CL0016