Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0460 ATGAAACAGAAATTAGCATGGTTCTGTAGGATGTTCATGAAGCGGCTGGCCCTCTCCTCTGTTTCCATGGCGGACTCAAACATTAGAGATTTTACCTTGAGAAGCTATGCTGTGGGAGATCTTCGAGCTGCAATGGAATCTGGAGGCTTTCATGGCTACCGCAAGCTCCCTAACACTTCTTCTCCAGGGTTGAAGCTATCTTCATCAGTATCAGTACCGGAGACGATGAACAACCACAACCACTCATCGTCGTCATCCACTGCTGCAGAAGACAATGAATGCACCGTGAGGGAGCAAGACAGGTTCATGCCGATCGCCAACGTCATCAGAATCATGCGCAAGATCCTCCCTCCACACGCCAAGATCTCCGACGATGCCAAGGAGACCATCCAGGAATGCGTGTCCGAGTACATCAGCTTCATCACCGGTGAGGCCAACGAGCGGTGCCAGAGGGAGCAGCGGAAGACGATCACTGCCGAGGACGTGCTGTGGGCCATGAGCAAGCTTGGCTTCGACGACTACATTGAGCCCCTGACCATGTACCTTCATCGGTACCGCGAGATGGAGGGTGATCGAGCCTCCATGCGGGGCGAGCCGCTCGGCAAGCGGACGGTAGAGCCGCAGTATGGGGCACCAGGGTTAGGTGCTTTTGTGCCGCCGTTTCACATGGGCCATCCGAATGGCTACTTTGGAGCCATGGGAGGGTACATGAGGGAGCATGTGCAGAATAATAATGGAGGAGGGGGGTCTTCCTCACAAGCTGAACCAAATGGTCAATACAAGCGAACTTAG 792 0.5404 MKQKLAWFCRMFMKRLALSSVSMADSNIRDFTLRSYAVGDLRAAMESGGFHGYRKLPNTSSPGLKLSSSVSVPETMNNHNHSSSSSTAAEDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYREMEGDRASMRGEPLGKRTVEPQYGAPGLGAFVPPFHMGHPNGYFGAMGGYMREHVQNNNGGGGSSSQAEPNGQYKRT 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0460 263 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 102 166 IPR003958 -
Lele51g0460 263 MobiDBLite consensus disorder prediction 243 263 - -
Lele51g0460 263 SUPERFAMILY Histone-fold 99 199 IPR009072 GO:0046982
Lele51g0460 263 FunFam Nuclear transcription factor Y subunit B-6 91 207 - -
Lele51g0460 263 ProSitePatterns NF-YB/HAP3 subunit signature. 133 149 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele51g0460 263 PRINTS CCAAT-binding transcription factor subunit A signature 149 167 - -
Lele51g0460 263 PRINTS CCAAT-binding transcription factor subunit A signature 130 148 - -
Lele51g0460 263 PRINTS CCAAT-binding transcription factor subunit A signature 168 186 - -
Lele51g0460 263 MobiDBLite consensus disorder prediction 61 93 - -
Lele51g0460 263 Gene3D Histone, subunit A 89 208 IPR009072 GO:0046982
Lele51g0460 263 MobiDBLite consensus disorder prediction 61 92 - -
Lele51g0460 263 MobiDBLite consensus disorder prediction 241 263 - -
Lele51g0460 263 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 79 235 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0460 Lele-ChrLele51 2711512 2715140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0460 45 229 CCAAT-HAP3 Transcription Factor Family AT5G47670 63.107 1.23e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele51g0460 CBFD_NFYB_HMF 8.6e-26 CL0012