Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0444 ATGCGTAGTAACTTATTATCTTGTTTTCTCTTGTTTGATAGCTTTGAAGCTAAGCAAATTTGGACTGTTGTCTGGTTTAGTTTACTAGATCAAGCTTGGTCTGAGAACGATGCCAAACCAGCTATGGTTTGCACTGCCAATGATTTACAAAGCTGGAAAGATTTTCCCAAGGGACTTAGGGTTCTTCTCCTTGATGGGGACACCAATTCTGCTTCCGATTTAAGATCAAAGCTCGAAGCCATGGGCTATATTGTTTCTATATTCTGCAATGAGAACGAAGCCTTGTCAGCGATCTCAAGCAAACCTGAAGGGTTCCATGTTGCCATTGTGGAGGTTAGTACAAGCAGTAACCAGGGATGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACGACCATTGCCTCAGCAACATGATGAAGTGTATAGCACTTGGTGCGGTCGAGTTCCTAAGAAAACCACTCTCAGAGGAAAAGCTCAGGAATATCTGGCAGCATGTGGTTCACAAGGCATTTAATGCTGGGGCGACCGTGCTGCCTGAATCGCTAAAACCCGTCAAAGAATCTGTAGTATCAATGTTGCAGCTTCCAACAGACAATAAGGAACAGCAAAGTAAAATCTCGATAGATATAGAGAAAGTATCGAGGTTTAGCGAAAATGACCATGAGTTGTCATCTGGGAGTGATAATAAATACCCAGCTCCTTCAACTCCACAATTAAAACAGGGGGCAAGATTACTGGATGATGGAGATTGCCATGAACAGACTCATTGCTTGACTGAAAAAGAAAGTGGAGAACTGGGTGGGGAAACTATATCTGTCGAAACTACATGTGGGAATTCAAATTCTGAAGGTGCCACACCTCAAACAAGTAAGCCTGAAACGACCGAAATCAAGAAGGAAGAGGACTTTGCCAATGGTTCTAAGAGTGAGAGTGATGTTTCTACACATAGTCATGATGGAAATTTTGTCAGCAGCAATGGTGATAGTACTCCATCTCCAAAAAAAGTAGGTGCTCTCAGTGATGCATGCAAGATCACAGCTAATAGAAAGAAATCGAAGAAGATGAAGGTAGACTGGACACCGGAACTGCACAACAAATTTGTTCAGGCAGTGGAACAACTAGGTATCGATCAAGCCATACCTTCTCGAATACTGGAGATTATGAAAGTGGAGGGCTTGACGAGGCATAATGTGGCCAGCCATCTTCAGAAGTATAGAATGCACAAGAGACATATTTTGCCCAAGGAAGAAGATCGAAGGTGGCCAAATCAAAGAGATATGATGCAAAGGAGCTATTATGTACCAAGACCAATTATGGCCTATCCTCCATATCATTCTAATTACACCTTATCTCCTGCTCCTATGTATCCTATGTGGGGACAACCGGGAAGTCAACCGTCCGGTGCACAGATGTGGGGCCTTCCTAACTATCACCTGTGGCAGCCTTTTCCAGGGATGCATGCAGAAGCATGGGGTTGTCCAGTGTTGCCACCTTCTCAAAATCCTTCTTTTTCTCACACCCAACATATGGCTGGCTTGCACTGTGCTAATAACATTGAGTATAATTCTAGCATGCCTCCGAGTTCATTGGAGCATCATCCGGCAGATGAAGTTGTTGACAAGGTTGTGAAGGAGGCAATAAGCAAGCCATGGCTGCCCTTGCCCTTAGGTCTGAAACCTCCTTCCACAGATAGTGTATTGGCTGAACTCTCTAGGCAAGCATATCCACCATCCCTCACGGAGATGGAAGTTGGGACCAGACCAGGGCAGCGTACCTTGTCTGGTCCCTCTCAAACCACCGACCTCTCTGAGGTTTCCACCAAGCTGCTGCTGATGATGATGTGA 1863 0.4455 MRSNLLSCFLLFDSFEAKQIWTVVWFSLLDQAWSENDAKPAMVCTANDLQSWKDFPKGLRVLLLDGDTNSASDLRSKLEAMGYIVSIFCNENEALSAISSKPEGFHVAIVEVSTSSNQGCFKFLENAKDLPTIMTSNDHCLSNMMKCIALGAVEFLRKPLSEEKLRNIWQHVVHKAFNAGATVLPESLKPVKESVVSMLQLPTDNKEQQSKISIDIEKVSRFSENDHELSSGSDNKYPAPSTPQLKQGARLLDDGDCHEQTHCLTEKESGELGGETISVETTCGNSNSEGATPQTSKPETTEIKKEEDFANGSKSESDVSTHSHDGNFVSSNGDSTPSPKKVGALSDACKITANRKKSKKMKVDWTPELHNKFVQAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRMHKRHILPKEEDRRWPNQRDMMQRSYYVPRPIMAYPPYHSNYTLSPAPMYPMWGQPGSQPSGAQMWGLPNYHLWQPFPGMHAEAWGCPVLPPSQNPSFSHTQHMAGLHCANNIEYNSSMPPSSLEHHPADEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQAYPPSLTEMEVGTRPGQRTLSGPSQTTDLSEVSTKLLLMMM 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0444 620 Pfam Myb-like DNA-binding domain 363 412 IPR001005 -
Lele51g0444 620 MobiDBLite consensus disorder prediction 299 321 - -
Lele51g0444 620 FunFam Two-component response regulator-like APRR2 58 184 - -
Lele51g0444 620 Gene3D - 356 418 - -
Lele51g0444 620 SUPERFAMILY CheY-like 57 175 IPR011006 -
Lele51g0444 620 ProSiteProfiles Response regulatory domain profile. 60 173 IPR001789 GO:0000160
Lele51g0444 620 MobiDBLite consensus disorder prediction 585 608 - -
Lele51g0444 620 FunFam Two-component response regulator 356 419 - -
Lele51g0444 620 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 357 416 IPR017930 -
Lele51g0444 620 MobiDBLite consensus disorder prediction 591 608 - -
Lele51g0444 620 MobiDBLite consensus disorder prediction 264 347 - -
Lele51g0444 620 Gene3D - 59 180 - -
Lele51g0444 620 MobiDBLite consensus disorder prediction 223 247 - -
Lele51g0444 620 MobiDBLite consensus disorder prediction 275 298 - -
Lele51g0444 620 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 360 415 IPR006447 GO:0003677
Lele51g0444 620 MobiDBLite consensus disorder prediction 322 339 - -
Lele51g0444 620 SUPERFAMILY Homeodomain-like 359 417 IPR009057 -
Lele51g0444 620 PANTHER TRANSCRIPTION ACTIVATOR GLK1 42 581 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0444 Lele-ChrLele51 2579970 2584987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0444 42 580 Response Regulator Gene Family AT4G18020 48.307 3.72e-138 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele51g0444 Myb_DNA-binding 6.7e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0432 49 2531245 2536337 Lele51g0444 51 2579970 2584987 hybridization
Lele50g0462 50 2665104 2670780 Lele51g0444 51 2579970 2584987 hybridization