Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0426 ATGTATAAAACAAACATGAATCAACCAAAATGTCCAGGATTTAGCTCTAAATCACGAAGTTGTCGTTTTCTGTTATTACTTATCGTTCCTCTCACGCTCACTATAAATCAAGGATCCATGCAGGACCACATGCTGAAAAGTGAAAGCCTTCACTCTGCTTGTGCTTGGGTTCTTGTATTTCTGCATCTTCGATTTGCGTTTTATCTGCGGACGGCCTTGATCGCCCTGTTCAGGGACTCAGGATTCTCTGCTCTTGCTTCTCCTCCCTCAACCTCTAGCTTTATTTATGAATGCATTCCTGAGGGAAAAGTCTGTCCCTTGAATGTTGCGCGATCTGATTTACTGATTAGTTTCTGAGTTTGGAAGAGAAAGACAACATTTTTGAAGCTTTATATAATGCCAGTTCCACTTGCCCCTTATCCGACGCCCCCAGCTCCATATACTCCTCCGGCAAATGGTTCACAGAGTCAGCTAGTGTGTTCTGGGTGTAGAAACCTTCTAATGTATCCTGTTGGAGCCACCTCTGTTTGTTGTGCTGTTTGCAATGCAGTCACAGTTGTGCCTCCTCCTGGCGCTGAAATGGCCCAGTTGGTTTGTGGAGGCTGCCACACTTTGCTCATGTACATTCGTGGAGCCACAAGTGTTCAATGCTCTTGTTGTCACACTGTCAATCTTGCTTTGGAAGCAAATCAGGTGGCACATGTCAATTGTGGGAACTGCAGGATGCTACTGATGTACCAATATGGAGCAAGATCCGTTAAATGCGCTGTTTGCAATTTTGTGACATCAGTTGGGGTGTCAGGAAGCACGACTGAGCAGAAGTTTAGTACATAA 834 0.4484 MYKTNMNQPKCPGFSSKSRSCRFLLLLIVPLTLTINQGSMQDHMLKSESLHSACAWVLVFLHLRFAFYLRTALIALFRDSGFSALASPPSTSSFIYECIPEGKVCPLNVARSDLLISFXVWKRKTTFLKLYIMPVPLAPYPTPPAPYTPPANGSQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTVVPPPGAEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSGSTTEQKFST 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0426 277 Pfam LSD1 zinc finger 160 184 IPR005735 -
Lele51g0426 277 Pfam LSD1 zinc finger 237 261 IPR005735 -
Lele51g0426 277 Pfam LSD1 zinc finger 199 223 IPR005735 -
Lele51g0426 277 PANTHER PROTEIN LSD1 138 187 IPR040319 -
Lele51g0426 277 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 157 187 IPR005735 -
Lele51g0426 277 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 196 225 IPR005735 -
Lele51g0426 277 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 234 264 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0426 Lele-ChrLele51 2456561 2459592 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lele51g0426 zf-LSD1 2.2e-11 No_clan