LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g0422	ATGGATTCTCGGGAGCCACCCCAGCATTCGCCACCGCCACGCTCCCAACCGCAACACTCATCAGCGCCACCAAACATTATGATACCCCCTGGTTCTTTTTCCTCCACCATGCCCAACCCAGTCCATTCTTCCTTGATCAACCCCAATTCCTCGTCCATGCTGATGGCCCCTGCTACCGCCCGATTCCCCTTCCCCCCATTTGTATCACAATCCCGTTCTCCTCCTCCTCCCCCTCCCCATCCTCCCCCTCCATCGAAGTCCGAACCTTTAAGAAACACTTCTCCTTACGAAGGCTCCTCCTCTGTGTTGAGGCCCTGCGGCTTGAGTATTGATTCTCCGAAGAAGAAGAGAGGCCGGCCGAGGAAGTATTCGCCGGATGGCAGCATTGCTCTGGGTTTGATTCCTACACCTTTGTCTTCTTCTGCCCCCGCTGATTTGAGTGGCACGTCCGGTGAACCACCAGCTAAAAAGAGCAGGGGAAGGCCGCCGGGCTCTGGAAAGAAGCAACTGGATTCTCTTGGAGTTGGCGGGACATGCTTTACTCCACATGTAGTCTTGGTGAAAACTGGGGAGGACATTGCAGCAAAGCTTATGTCATTTTGTGAAGAAGGGTCACGTTCAGTCTGTATTCTTTCTGCTAATGGTGCAATCTGCAATGCCACCCTTCGACAGCCAGCTACATCTGGCGGTACAGTGTACTATGAGGGTCGATATGAGATTATATCTTTATCAGGTTCTTTCGATCCATCTGAAGACGGTAGTTGTAGAACAGGTGGGTTGAGTGCCACTCTCGCGGGGACTGATGGAAAAATTGTGGGTGGTAGCGTTTCTGGAATGCTAGTTGCAGCATCGCCAATACAGGTCATCGTGGGTAGCTTCATTGTGGACGGGAAGAAAAAGTCGAGCTCAAAGGAGAAACCTGGGCCCTCCTCGGCAGCAACGCCCCCGGGAACTCAAGTGTTGAATTTTGGCGCATCGCCTGTGACTCCAACCAATGCTACCTCTCAAGGGGGTTCAAGGGATTCTTCTAATGACGATGACGGTGGGTCTGGGTCAGGGTCTGGCACTGGGTCGGGGTCTGGGACTGGGGCTGCACTCCACAGTAGTGTTAGCCAGCCCATTCATAATATGCCATGGCATCATCAACTATGGCCTCCGCAGCGATGA	1167	0.533	MDSREPPQHSPPPRSQPQHSSAPPNIMIPPGSFSSTMPNPVHSSLINPNSSSMLMAPATARFPFPPFVSQSRSPPPPPPHPPPPSKSEPLRNTSPYEGSSSVLRPCGLSIDSPKKKRGRPRKYSPDGSIALGLIPTPLSSSAPADLSGTSGEPPAKKSRGRPPGSGKKQLDSLGVGGTCFTPHVVLVKTGEDIAAKLMSFCEEGSRSVCILSANGAICNATLRQPATSGGTVYYEGRYEIISLSGSFDPSEDGSCRTGGLSATLAGTDGKIVGGSVSGMLVAASPIQVIVGSFIVDGKKKSSSKEKPGPSSAATPPGTQVLNFGASPVTPTNATSQGGSRDSSNDDDGGSGSGSGTGSGSGTGAALHSSVSQPIHNMPWHHQLWPPQR	388

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g0422	388	MobiDBLite	consensus disorder prediction	1	173	-	-
	Lele51g0422	388	MobiDBLite	consensus disorder prediction	68	89	-	-
	Lele51g0422	388	SMART	AT_hook_2	114	126	IPR017956	GO:0003677
	Lele51g0422	388	SMART	AT_hook_2	156	168	IPR017956	GO:0003677
	Lele51g0422	388	MobiDBLite	consensus disorder prediction	20	56	-	-
	Lele51g0422	388	SUPERFAMILY	AF0104/ALDC/Ptd012-like	179	294	-	-
	Lele51g0422	388	CDD	DUF296	181	293	IPR005175	-
	Lele51g0422	388	MobiDBLite	consensus disorder prediction	299	388	-	-
	Lele51g0422	388	MobiDBLite	consensus disorder prediction	306	376	-	-
	Lele51g0422	388	Gene3D	-	182	306	-	-
	Lele51g0422	388	Pfam	Plants and Prokaryotes Conserved (PCC) domain	182	293	IPR005175	-
	Lele51g0422	388	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	76	344	IPR039605	GO:0003680
	Lele51g0422	388	ProSiteProfiles	PPC domain profile profile.	177	315	IPR005175	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g0422	Lele-ChrLele51	2439433	2443033	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g0422	107	324	AT-hook Motif Nuclear Localized (AHL) Family	AT4G17950	52.419	1.93e-66	215