Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0417 ATGTCTGTAACACAAACCATAGCTCCTCCAGAGATTGTTGCCCTTGCGTCGTCGTCGTCCATGACCCAAGACCCTCCAAATCACCCGACAAATTCTAACGCCTTGATGTCGTGGAACCCTGAGGAAGATGACTCATGGGAGGTCAGAGCTTTTGCGGAAGATACACGAAATGTCATGGGCACCACTTGGCCTCCCAGGTCCTACAACTGCACTTTCTGCAGAAGGGAGTTCCGTTCCGCCCAAGCTCTCGGCGGCCACATGAACGTCCACCGCCGTGACCGGGCTCGCCTCCACCAACTCCACCCCAACTCTAATTCCTTCATAATCCCATCACCACAAGACCTTGTTCCTAGTAATGGATTGTGCCTTCTCTATCGTTTACCAACAGCCCCTAATAATCCCACCTTTGCCTTCGCTAACAGTACTGCTCCTACTGTCACCGGTCCGAATGCATGTGGAGAATCAACTTCCACGATTCTCTCCGTCTCGCCTTATCCGGCGAACAAGTTCGATTTTAATTCGGTGCTACGATCTGGCTGTAATATTTCGTCTTACTCTAATAACTCCACCAAAGTGGAACTGCCCACCACCAAATCCTCCAATGATGGCCACGAAGAGCTTGATCTTGAGCTCCGGCTAGGCCACAGGCCAACGCCAACCTGA 663 0.5173 MSVTQTIAPPEIVALASSSSMTQDPPNHPTNSNALMSWNPEEDDSWEVRAFAEDTRNVMGTTWPPRSYNCTFCRREFRSAQALGGHMNVHRRDRARLHQLHPNSNSFIIPSPQDLVPSNGLCLLYRLPTAPNNPTFAFANSTAPTVTGPNACGESTSTILSVSPYPANKFDFNSVLRSGCNISSYSNNSTKVELPTTKSSNDGHEELDLELRLGHRPTPT 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0417 220 SUPERFAMILY beta-beta-alpha zinc fingers 65 95 IPR036236 -
Lele51g0417 220 MobiDBLite consensus disorder prediction 189 208 - -
Lele51g0417 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Lele51g0417 220 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Lele51g0417 220 Gene3D Classic Zinc Finger 58 107 - -
Lele51g0417 220 Pfam C2H2-type zinc finger 68 92 - -
Lele51g0417 220 PANTHER OS07G0101800 PROTEIN 41 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0417 Lele-ChrLele51 2404795 2405457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0417 31 217 C2H2 Transcription Factor Family AT4G17810 41.919 6.42e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele51g0417 zf-C2H2_6 1.4e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0417 51 2404795 2405457 Lele51g0417 51 2404795 2405457 ECH
Lele49g0408 49 2364700 2365371 Lele51g0417 51 2404795 2405457 hybridization
Lele50g0438 50 2496917 2497591 Lele51g0417 51 2404795 2405457 hybridization