Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0400 ATGAGTCTTGCTGATGCTTCCAGTAGCCCAGGCTTTCACCTTGTTCTAGGGTTAGGTGTGACTGGTGCTCCGTCCAAAGCTGACCATAATACTAGGCCTTCCAAGAGCTCCTGCAATTTCGCGCCAACAACTAGTTGTGAGCCATCTTTAACCTTGGCTCTTTCCGCCGAGACTCAACAAGTCCTTAAAAAGGTTGACGCGAATAGAAGTTGTGAGCATCCTCTTGACTTTTCTCGCCAAACATCGCCTCACAGTGCCGTCTCATCCTTCTCCGGTGGGAGAGTGAAAAGGGAGAGAGATCTCAACAATAACGAAGGGGTCGAGGCAGCGGAGAGGGTTTCCTCGAGAGGGAGCAACGAATACGAAGACGGAACCAGTGCCAGAAAGAAGCTCAGACTCAACAAAGAACAATCTGCCTTGCTAGAGGAAAGCTTCAAACAAAATAGCACTCTCAATCCTAAGCAGAAGCAAGCATTAGCCAGGCAGCTAAATCTGAGGCCGAGACAAGTTGAAGTGTGGTTCCAAAATCGGAGGTCCAGGACAAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCTTAAAGAAATGCTGCGAGACGCTGACGGATGAAAACAGAAGGCTGCAGAAGGAGGTGCAAGAGCTGAAGGCGATGAAGCTAGCCCAACCTCTGTGTATGGCGATGCCGGCGGCCACTCTCACCATGTGCCCATCCTGCGAGAGGCTGGGCGGGGTCGCCAGCGACGGCGCTTCTAATGACAAGACCGCCTTCTCAATGGCTCCAAAACCTCATTTCTACACGGCCTTCCCCAATCCTTCGGCGGCATGCTGA 828 0.5217 MSLADASSSPGFHLVLGLGVTGAPSKADHNTRPSKSSCNFAPTTSCEPSLTLALSAETQQVLKKVDANRSCEHPLDFSRQTSPHSAVSSFSGGRVKRERDLNNNEGVEAAERVSSRGSNEYEDGTSARKKLRLNKEQSALLEESFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRSRTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKAMKLAQPLCMAMPAATLTMCPSCERLGGVASDGASNDKTAFSMAPKPHFYTAFPNPSAAC 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0400 275 MobiDBLite consensus disorder prediction 74 89 - -
Lele51g0400 275 MobiDBLite consensus disorder prediction 115 130 - -
Lele51g0400 275 SMART HOX_1 126 188 IPR001356 GO:0003677
Lele51g0400 275 MobiDBLite consensus disorder prediction 27 42 - -
Lele51g0400 275 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Lele51g0400 275 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
Lele51g0400 275 Coils Coil 190 220 - -
Lele51g0400 275 CDD homeodomain 128 185 IPR001356 GO:0003677
Lele51g0400 275 CDD bZIP 177 216 - -
Lele51g0400 275 Gene3D - 121 189 - -
Lele51g0400 275 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Lele51g0400 275 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Lele51g0400 275 FunFam Homeobox-leucine zipper protein 18 109 189 - -
Lele51g0400 275 MobiDBLite consensus disorder prediction 74 130 - -
Lele51g0400 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 255 - -
Lele51g0400 275 MobiDBLite consensus disorder prediction 23 42 - -
Lele51g0400 275 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Lele51g0400 275 SUPERFAMILY Homeodomain-like 117 185 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0400 Lele-ChrLele51 2315929 2317101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0400 1 275 Homeobox Transcription Factor Family AT4G37790 59.375 6.86e-95 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele51g0400 Homeodomain 1.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0389 49 2282658 2283822 Lele51g0400 51 2315929 2317101 hybridization
Lele50g0418 50 2381944 2383080 Lele51g0400 51 2315929 2317101 hybridization