Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0359 ATGAGTTGCAACGGTTGCCGCGTCCTTCGAAAAGGCTGCAGCGAGTCGTGTATTCTGCGGCCTTGCTTGCAGTGGATTGACACGCCCGAAGCCCAAGGACATGCTACTGTCTTCGTAGCCAAGTTCTTTGGCCGCGCTGGTCTCGTGTCCTTCATTTCCAACGTTCCTGAAAATCAGAGACCTGCTCTGTTTCAGTCATTGTTGTTCGAAGCGTGTGGACGAACGGTGAATCCGGTGAACGGAGCTGTGGGGCTTCTGTGGACGGGAAACTGGCACGTGTGTCAGGCCGCCGTTGAGACGGTGCTGCGTGGCGGTACGTTAAGGCCCATTCCCGAGCTTCACGGCTTGGATGCTTCTACTCTGGCTGCCGACGAGGCGTCTGAGGCGGAAGTCGCGGGATCCGACATGTGGAGCATCAGAGATCCGAACCTCAGCTCGCGGTTCACAAATTCGCGATCTAACAAGTTCTCTTCCTGCAAACGGAAGCGATCAGAAGAATCCAACCAGCCTCAATCGGCCGATCTTGATCTCCGGTTGATGCCGAGTTTCCTGCAGAAAGTGTCAGGCTACAGCTGCGGACCGGAAATCCGCCAGCCAGGGACGCCGTCTATGAACTCAGAAGAATCCGTGACGACGACGGCGTGCTTGGAAAGTGGACCTGGAGTTCACTACGCTCACGCCGGAGAGCCCAAACTTCTCAACTTTTTCTCGTGA 714 0.5602 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRAGLVSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPIPELHGLDASTLAADEASEAEVAGSDMWSIRDPNLSSRFTNSRSNKFSSCKRKRSEESNQPQSADLDLRLMPSFLQKVSGYSCGPEIRQPGTPSMNSEESVTTTACLESGPGVHYAHAGEPKLLNFFS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0359 237 MobiDBLite consensus disorder prediction 148 173 - -
Lele51g0359 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 216 - -
Lele51g0359 237 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Lele51g0359 237 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0359 Lele-ChrLele51 2055680 2056485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0359 1 237 AS2 family AT3G49940 54.902 1.82e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lele51g0359 LOB 5.3e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0359 51 2055680 2056485 Lele52g0370 52 2174565 2175370 ECH
Lele51g0359 51 2055680 2056485 Lele51g0359 51 2055680 2056485 ECH
Lele49g0346 49 2036437 2037242 Lele51g0359 51 2055680 2056485 hybridization
Lele50g0367 50 2091642 2092447 Lele51g0359 51 2055680 2056485 hybridization