Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0352 ATGGAACTTTCTTCTTCCTTCATCCTTTCCCCAAAACCATCATCCCAGGGTTTTAATTACTCTTTCTCATCTTCACTTTCTTCATTTCGTTTTCAAACTCTCATTCGAAACCCCGGAATCCAAAATCCTACCTCACAAAGCTTTCGTATTTTGGCCGTGGCCTTAGACCCGCCACAGGAACTTCCTAAAAATAGTCCCCAACGACTTCTGAAGGAGCTCGCTGAACGTAAGAAAGTAACCTCTCCAAAGAAAAAGGCACCGCCTAGGAAGTTCATTTTACGGCCTCCTCTTGATGACAATAAATTAGCTCAGAGGTTTCTCAATAGCCCTCAATTGTCCCTCAAATCGTTTCCTTTATTAAGTTCTTGCTTACCTTCTTCTCGGCTTAACAATGCTGATAAGACATGGATGGACGAGTACTTGCTCGAAGCGAAGCAAGCTCTGGGATACTCACTTGAGCCATCAGAGAACCTCGGGGATGATAATCCGGCAAAGCAATTCGATACTTTGTTATACTTGGCGTTTCAACATCCATCGTGTGAGAGAACAAAGGCAAGGCATGTGAGATCCGGCCATACTAGGCTATTGTTTTTAGGGCAGTATGTTCTTGAGTTGGCGCTTGCAGAATATTTCTTACAGAGATATCCGAGGGAGTTACCGGGTCCAATGCGGGAGAGGGTATTCGGGTTAATTGGAAAGAGAAACTTGCCCAAGTGGATTAAAGCCGCTAGCTTGCAGAATTTGATCTTCCCATATGATGATATTGACAAGTTGGTGAGAAAGGAGAGGGAAGGACCCGTAAAGTTTGTATTTTGGGCTTTGTTTGGTGCAATCTATCTGTGTTTTGGTATGCCGGAAGTATATCGCGTTCTTTTTGAAGCCTTTGGAATGGATCCAGATGCTGAGGATTGCCAACCCAGATTACGTAGACAACTTGAAGATGTAGATTATGTATCTGCTGAATTTGAAGGCAAGCTGAGCTGGCAAGATGTGGCTACATACAAGCCTCCGGCAGATGCTCTGTTTGCACATCCAAGGCTCTTCAGAGCTTGTGTTCCTCCAGGAATGCATCGGTTCAGAGGAAATGTTTGGGATTATGATAGCAGACCACAGGTTATGCAAGCTCTGGGATATCCCTTAGAATTGACAGAGAGCATTCAAGAAATTACTGAAGCTCGGAATATAGAACTTGGACTTGGGTTACAGCTTTGTTTCTTGCATCCATCGAAATACAAATTTGAGCATCCTCGATTTTGCTACGAGAGACTAGAATACCTTGGCCAAAAGATACAGGATTTGGTGATGGCTGAAAGATTGTTGATGAAGCATTTAGATGCTCCAGGCTTGTGGCTACAGGAGAGGCACCGTCGCCTTCTTATGAACAAGTTCTGTGGAAGATATTTGAGGGACAAACGTCTCCACCGTTTCATCATATATTCTGAACAGGTACAGGACCGTTATGAGCATAACCGGAGAATGAGGAACCCCGCCACGACAGCTGTTCAGCAAGCCATTCATGGTCTTGCATATGCTGTTTATGGGAAACGTGATGTAAGACGTCTAATGTTTGAAGAATTTGACTTTGAGCAGATTCAGCCTAAAGCTATATGA 1611 0.4389 MELSSSFILSPKPSSQGFNYSFSSSLSSFRFQTLIRNPGIQNPTSQSFRILAVALDPPQELPKNSPQRLLKELAERKKVTSPKKKAPPRKFILRPPLDDNKLAQRFLNSPQLSLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYSLEPSENLGDDNPAKQFDTLLYLAFQHPSCERTKARHVRSGHTRLLFLGQYVLELALAEYFLQRYPRELPGPMRERVFGLIGKRNLPKWIKAASLQNLIFPYDDIDKLVRKEREGPVKFVFWALFGAIYLCFGMPEVYRVLFEAFGMDPDAEDCQPRLRRQLEDVDYVSAEFEGKLSWQDVATYKPPADALFAHPRLFRACVPPGMHRFRGNVWDYDSRPQVMQALGYPLELTESIQEITEARNIELGLGLQLCFLHPSKYKFEHPRFCYERLEYLGQKIQDLVMAERLLMKHLDAPGLWLQERHRRLLMNKFCGRYLRDKRLHRFIIYSEQVQDRYEHNRRMRNPATTAVQQAIHGLAYAVYGKRDVRRLMFEEFDFEQIQPKAI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0352 536 CDD RIBOc 169 303 IPR000999 GO:0004525|GO:0006396
Lele51g0352 536 PANTHER RIBONUCLEASE III 87 341 IPR011907 GO:0003723|GO:0004525|GO:0006364
Lele51g0352 536 FunFam Ribonuclease III domain-containing protein RNC1, chloroplastic 166 297 - -
Lele51g0352 536 ProSiteProfiles Ribonuclease III family domain profile. 141 283 IPR000999 GO:0004525|GO:0006396
Lele51g0352 536 SUPERFAMILY RNase III domain-like 401 526 IPR036389 GO:0004525|GO:0006396
Lele51g0352 536 FunFam Ribonuclease III domain-containing protein RNC1, chloroplastic 393 529 - -
Lele51g0352 536 Gene3D Ribonuclease III domain 385 529 IPR036389 GO:0004525|GO:0006396
Lele51g0352 536 Gene3D Ribonuclease III domain 166 296 IPR036389 GO:0004525|GO:0006396
Lele51g0352 536 SUPERFAMILY RNase III domain-like 136 296 IPR036389 GO:0004525|GO:0006396
Lele51g0352 536 SMART riboneu5 169 306 IPR000999 GO:0004525|GO:0006396
Lele51g0352 536 SMART riboneu5 401 533 IPR000999 GO:0004525|GO:0006396
Lele51g0352 536 CDD RIBOc 401 526 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0352 Lele-ChrLele51 2009824 2012909 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0352 51 2009824 2012909 Lele53g0181 53 1507466 1514443 CCT
Lele51g0352 51 2009824 2012909 Lele54g0183 54 1563643 1568567 CCT
Lele51g0352 51 2009824 2012909 Lele55g1304 55 19489352 19495129 CCT
Lele51g0352 51 2009824 2012909 Lele56g1253 56 15852715 15857683 CCT
Lele51g0352 51 2009824 2012909 Lele51g0352 51 2009824 2012909 ECH
Lele49g0339 49 1991214 1994321 Lele51g0352 51 2009824 2012909 hybridization
Lele50g0358 50 2049178 2054970 Lele51g0352 51 2009824 2012909 hybridization