Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0346 ATGCCATTTATATCACACTGCAATGACTCAACGCGCTATCGCATGTTCCCGTGTCCAATCTGTAGAGCTCACGGTTTCAGTACTAACTCGGAGTCAGCTGGGACCGATTTCCCGGTGGAAAATGCGTACGAGCTGTTAGGAGTGTCATATACCAGTTCGTTTGCTGAGATCAAAGCGTCTTTTCGCAGGTTGGCCAAGGAAACTCACCCTGACCTTGCTGACTCAAATAACGATTCATCTACGTCGCGACGATTTGTGCAAATCCTGGCCGCCTACGAGATTCTTTCAGATTCCAACAAGAGAGCTCATTATGACAGATACCTTTTGTCTCAAAAGAAGCTTGTGGACAAGCATACTGGGCAGGGTTCAAAATTACACTTCTATAGATCACATGAAACAACTTCCAAGGAGATGGAAGTTGTTGAATGGTTAAAGTGGTACAGATTAGCTATAAATGATATTTTGTCAGAGAAGAGGGTAGTAGTTGGAACTGGCTATTTTGATGTACTTGAGAGAGATTTTTACTCAGCCATTCACGCTGCTTACTTTGGCCCTGAAATTGAGTCAATGGAGCTTTTTCCTGAGTGCTTTGAGGCTGAAGAAAGGTCCTCTTGTGAAACACCAGAGATTTTGCACATAGTATCAGGTCGTGATCTTTTTGGGATGGTTTGCCTAGCCAATAAGAACCCAGAGATATCATCTACCAATAATGAAAAGTTAACTTCTTTCAGATCCTTCGATCCAGGCCTATGTCAATCTATAAAGAATGCAAAAGCAGAAGTTCCATATGGATTTGGAATTCCACAAATTCATGACTCTAGAATATCAAGTCACATATCAGATGCATATAGAGATCTAGAGTTGCATGTCTCTGGAAGTGTGGTTGCTGTGGCCTCCAGGGTCCCTCCTGGAAGCTATTCTGATGCTGAAGTTGCAGAAGATCGCATTCATGTTTATCTTAATTCAGATGAATACACCAAGCATACCAACAACTGTGATTCTAAAAATTACTTCACAAGTAAATCAGCTGTTGCACGAATTCATATAGGAACCATAGCTGGGCTTGGGACCAGTCCGGACGAAAGTTCATGTAATGTCTATGACAGTAGAGGGGCCAAGACTCATGTGATTATGAAACACAGGACCTTGCTGGTGAAGCACATACACTGGTATCAAGTTGGAGAAAAAGTTTCTATTTGTGAGTGTAGATGCACCAGAGCCAAATTACCACCAAGCAAATTTTGGCTATTTGAGCCTCGTTGTGGTTTGCATGACATAGGGGGTTGGTATGTTGAAACATATGGCAAAGATAAGAAAGGTCGAACAATCCCATCACAAAGGTTATGGGATGGCTGGGGTGATGGTCAGCACTTTGAGAGAAGACTTCATCCAGCAATGTATCTACTTGCTCTTGCATATAGGACACTTGATCTTGAATATGCTAGAGTAAGAAAACAAACATTTAGGAAGGCCGTGGAAGGGCGCCTATTTAGAATCCTTCATTGGTGCAAAAGACTTGGTTAA 1524 0.4226 MPFISHCNDSTRYRMFPCPICRAHGFSTNSESAGTDFPVENAYELLGVSYTSSFAEIKASFRRLAKETHPDLADSNNDSSTSRRFVQILAAYEILSDSNKRAHYDRYLLSQKKLVDKHTGQGSKLHFYRSHETTSKEMEVVEWLKWYRLAINDILSEKRVVVGTGYFDVLERDFYSAIHAAYFGPEIESMELFPECFEAEERSSCETPEILHIVSGRDLFGMVCLANKNPEISSTNNEKLTSFRSFDPGLCQSIKNAKAEVPYGFGIPQIHDSRISSHISDAYRDLELHVSGSVVAVASRVPPGSYSDAEVAEDRIHVYLNSDEYTKHTNNCDSKNYFTSKSAVARIHIGTIAGLGTSPDESSCNVYDSRGAKTHVIMKHRTLLVKHIHWYQVGEKVSICECRCTRAKLPPSKFWLFEPRCGLHDIGGWYVETYGKDKKGRTIPSQRLWDGWGDGQHFERRLHPAMYLLALAYRTLDLEYARVRKQTFRKAVEGRLFRILHWCKRLG 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0346 507 ProSitePatterns Nt-dnaJ domain signature. 85 104 IPR018253 -
Lele51g0346 507 Gene3D DnaJ domain 32 128 IPR036869 -
Lele51g0346 507 PRINTS DnaJ domain signature 80 100 IPR001623 -
Lele51g0346 507 PRINTS DnaJ domain signature 61 76 IPR001623 -
Lele51g0346 507 PRINTS DnaJ domain signature 43 61 IPR001623 -
Lele51g0346 507 CDD DnaJ 41 97 IPR001623 -
Lele51g0346 507 Pfam DnaJ domain 41 105 IPR001623 -
Lele51g0346 507 ProSiteProfiles dnaJ domain profile. 41 108 IPR001623 -
Lele51g0346 507 SMART dnaj_3 40 100 IPR001623 -
Lele51g0346 507 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 16 506 - -
Lele51g0346 507 SUPERFAMILY Chaperone J-domain 40 111 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0346 Lele-ChrLele51 1973323 1976816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0346 43 105 C2H2 Transcription Factor Family AT1G74250 43.939 3.02e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0346 51 1973323 1976816 Lele51g0346 51 1973323 1976816 ECH
Lele49g0332 49 1956259 1959873 Lele51g0346 51 1973323 1976816 hybridization
Lele50g0351 50 2014365 2017755 Lele51g0346 51 1973323 1976816 hybridization