LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g0338	ATGCCTCGCCAAGATCACGAGCACGAACAACCACTGTTAGTGGACTCTGACAAACAAACTACCGAAGCCGCTTACGATTCCTCCGAGAAAGTCGTGGTCGTTGGCATCGACGAGTCCAACCCTGACTACGACGGCTGTGATCGCGCCCCGCCGTTTTCATGGAAGAAGCTCTGGCTCTTCACTGGTCCTGGTTTTCTCATGAGCATTGCCTTTCTCGATCCTGGAAATCTTGAAGGAGATCTTCAGGCTGGCGCAATTGCTGGCTACTCCCTCTTATGGCTTCTCATGTGGGCTACAGTTATGGGGCTTCTGGTTCAGCTTTTGGCGGCACGGCTAGGAGTGGTGACTGGGAAGCATCTGGCTGAACTCTGCAGGGAGGAGTATCCAACTTGGGCGAGGATGGTACTGTGGGTTATGGCGGAGTTGGCTCTGATTGGGTCTGACATTCAAGAGGTTATTGGTAGCGCTATTGCTATCAGAATTCTAAGTAACGGGATAGTGCCTCTTTGGGCGGGGGTCATCATCACAGCTTGTGATTGTTTTATTTTCCTATTTCTTGAGAACTACGGTGTGAGGAAATTGGAAGCATTTTTTGCTGTTCTCATTGGTGTAATGGCCATCTCATTTGCGTGGATGTTTGGTGAAACAAAGCCTAGCGGCAAAGATCTTCTTATTGGTATTTTGGTTCCGAAACTTAGTTCCAGAACAATACAGAAGGCTGTTGGAGTAGTGGGTTGCATTATTATGCCTCACAATGTATTCTTGCACTCTGCACTTGTTCAGTCAAGACAGGTTGAGCAGAGCAAGAAAGGCCGAGTTCAGGAAGCACTTAATTATTATTCTATAGAGTCAACCGCTGCCCTTTTTATCTCCTTTATCATTAATGTATTTGTCACGACTGTGTTTGCAAAGAGTTTTTATGGTACTGACCTTGCAGATAGTGTTGGTCTTGTGAATGCTGGGCAGTATCTTGAAGAAAAGTATGGAGGTGGACTTCTGCCAATCTTATATATATGGGGTATTGGGTTATTAGCAGCTGGTCAAAGTAGCACTATTACTGGGACTTATGCTGGACAGTTTATAATGGGGGGCTTTCTTAATTTAAGGTTGAAAAAATGGATGAGGTCGTTAATTACACGAAGTTGTGCTATCATCCCAACCGTGACAGTTGCTCTTGTCTTTGAAACATCAGAGGACTCGTTAGATGTTCTAAATGAATGGCTTAATGTTCTCCAGTCAATTCAAATCCCCTTTGCACTTATTCCCTTGCTTTGTCTGGTGTCCAAGGAGCACATAATGGGCGCTTTCAGAATTGGCCCTGCCCTCAAGACTATTGCATGGTTTGTGGCTGCTATGGTGATAGCGATCAATGGGTATCTTATGCTGGAATTCTTCAACTCTGAGGTCAATGGAGTAATGTTTGGTGCTGTCGTGTGCGCTTTTGTGGCTGCATATGTTGCATTCATACTTTACCTTGTTTCAAGGGCCATCACCTTTCCACCAAGGCAAAGCTCAACACAATCAAAGATAATTGCTAACTCACAGAATTAA	1551	0.4507	MPRQDHEHEQPLLVDSDKQTTEAAYDSSEKVVVVGIDESNPDYDGCDRAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATVMGLLVQLLAARLGVVTGKHLAELCREEYPTWARMVLWVMAELALIGSDIQEVIGSAIAIRILSNGIVPLWAGVIITACDCFIFLFLENYGVRKLEAFFAVLIGVMAISFAWMFGETKPSGKDLLIGILVPKLSSRTIQKAVGVVGCIIMPHNVFLHSALVQSRQVEQSKKGRVQEALNYYSIESTAALFISFIINVFVTTVFAKSFYGTDLADSVGLVNAGQYLEEKYGGGLLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRSLITRSCAIIPTVTVALVFETSEDSLDVLNEWLNVLQSIQIPFALIPLLCLVSKEHIMGAFRIGPALKTIAWFVAAMVIAINGYLMLEFFNSEVNGVMFGAVVCAFVAAYVAFILYLVSRAITFPPRQSSTQSKIIANSQN	516

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g0338	516	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	49	497	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lele51g0338	516	Pfam	Natural resistance-associated macrophage protein	78	439	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lele51g0338	516	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	55	433	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lele51g0338	516	Hamap	Divalent metal cation transporter MntH [mntH].	41	465	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lele51g0338	516	MobiDBLite	consensus disorder prediction	1	15	-	-
	Lele51g0338	516	PRINTS	Natural resistance-associated macrophage protein signature	191	212	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lele51g0338	516	PRINTS	Natural resistance-associated macrophage protein signature	409	428	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lele51g0338	516	PRINTS	Natural resistance-associated macrophage protein signature	240	263	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lele51g0338	516	PRINTS	Natural resistance-associated macrophage protein signature	136	162	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lele51g0338	516	PRINTS	Natural resistance-associated macrophage protein signature	166	185	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Showing 1 to 10 of 13 entries

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g0338	Lele-ChrLele51	1936339	1939062	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g0338	1	509	Inorganic Solute Cotransporters	AT2G23150	76.078	0.0	796

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele51g0338	51	1936339	1939062	Lele54g0165	54	1413009	1414972	CCT
	Lele51g0338	51	1936339	1939062	Lele55g1319	55	19630028	19631973	CCT
	Lele51g0338	51	1936339	1939062	Lele56g1269	56	15993385	15995348	CCT
	Lele53g0170	53	1411892	1416402	Lele51g0338	51	1936339	1939062	CCT
	Lele54g0171	54	1462802	1464861	Lele51g0338	51	1936339	1939062	CCT
	Lele55g1313	55	19585144	19586200	Lele51g0338	51	1936339	1939062	CCT
	Lele56g1264	56	15953287	15955343	Lele51g0338	51	1936339	1939062	CCT
	Lele51g0338	51	1936339	1939062	Lele51g0338	51	1936339	1939062	ECH
	Lele49g0325	49	1921308	1924029	Lele51g0338	51	1936339	1939062	hybridization

Showing 1 to 9 of 9 entries