Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0321 ATGTATATTTTTGCCTCGTTATTGCTTGAGTCTTCGGACAACCCAAATGTAACTTTGTGCTGTATCCTTGCTGATCCAAAGGGTATCATGGCTCTTGAGATTGTTCGGAGAAGGGATCTCATACTGCGTTTTGGTGGCATTCTTATCAAAGATCGAACTTTCCAGCTTAGCAAGTTTTCTGTTCCGCCTGGCGTTAACATTAACAATACCCAATCAATAATCGTTTTGGATGAGTACACCACTGTGGAGGGTGTATTGGAAGAGACAGAATGCCCTCGGATGATGTTTCCACCATGTGAGAATTCATTTCGATGTGTCTTCCGTGGTCCTCATGCCTTCTGGGCTGATTACTGTTGCAAAAGCATCAGGGGCACTGTTTACCCTGGGGTTGTTCTTCCCTGGATCAAGATGGAGCGCATGAATGGGTTGGTTACTTTCAGGAGCTTTGGTACAATTTCAAGATTTCTGTTGGACTACCAAGATTCAGAGATTGATCTTCTCAGGGAAATATGCGTCACAAACGTTCCGATGTTGAATGCAATGCGCCAGACAGGAAAGAAGCAGAAAATGGCGACCAACATTGGCATCATGGATTCGGCTTACTTTGTTGGTAGATCTGAGATTCTCGCCTGGATGAACTCGTCACTCCAATTAAGTCTCTCCAAAGTCGAAGAGGCTTGTTCTGGTGCTGTACACTGCCAGCTTATGGATGCGGTCCATCCTGGGATTGTGCCGATGCACAAGGTAAATTTTGATGCCAAGAGCGAGTACGAGATGATTCAGAACTACAAGGTCCTTCAAGACGTCTTCAATAAACTCAAAATCACCAAGCATATCGAAGTCAGCAAGCTTGTGAAAGGAAGACCGCTGGATAATTTGGAGTTCATGCAGTGGATGAAACGATATTGTGACTCTGTCAACTCGGGACTTCTGAACTCTTACAATCCTCTGGAAAGGAGAGAGTCATGTAAGGGGGGAAGAGAAGCAAACAGGAAATCATCACAATCCCAGTCCTCTGCTAAGGTTTCTACTACCGCGAAGTCTCACTCTTCTCATAACGGACGAAGACATGACGTATCTTCTGGAAATAACGCAAATCAAGCAGCAAGAGGCGCAAAACCTCCAAGCAGCGGCCCTTCATACGATGAACAGATCACGGAGTTAAAATTGTCCATTGATGGCCTTGAAAAAGAGAGGGATTTCTACTTCGCAAAACTGAGGGATATTGAGATACTCTGCCAAAATCCTGGACTAGAACAGTTACCGGTTGTCGCAGCAATTCAGAAGATATTATATGCCACAGATGATGATGCAACGGTTGTGGCGGAAGCTCAAGCCATGGTTTCAGTTCAGCAGAAGGAAGGTGAGAGATTGAGCCCCATCACAGAGGTTTCGGAGGAGAAAGGCAGTACCGGAAATCAGAAGAGAAAGATCATTGTGAATCCAGACTTTGATGCGACTGGCATCATAACATTGTCGCCGAGGCAAAGGCTTTCTGATGTTTCAGATGTTCATTGTAGCGGGTCACCTCTCATGACTTGTTAA 1545 0.4511 MYIFASLLLESSDNPNVTLCCILADPKGIMALEIVRRRDLILRFGGILIKDRTFQLSKFSVPPGVNINNTQSIIVLDEYTTVEGVLEETECPRMMFPPCENSFRCVFRGPHAFWADYCCKSIRGTVYPGVVLPWIKMERMNGLVTFRSFGTISRFLLDYQDSEIDLLREICVTNVPMLNAMRQTGKKQKMATNIGIMDSAYFVGRSEILAWMNSSLQLSLSKVEEACSGAVHCQLMDAVHPGIVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSGLLNSYNPLERRESCKGGREANRKSSQSQSSAKVSTTAKSHSSHNGRRHDVSSGNNANQAARGAKPPSSGPSYDEQITELKLSIDGLEKERDFYFAKLRDIEILCQNPGLEQLPVVAAIQKILYATDDDATVVAEAQAMVSVQQKEGERLSPITEVSEEKGSTGNQKRKIIVNPDFDATGIITLSPRQRLSDVSDVHCSGSPLMTC 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0321 514 MobiDBLite consensus disorder prediction 320 382 - -
Lele51g0321 514 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 370 440 IPR004953 GO:0008017
Lele51g0321 514 Gene3D - 380 457 - -
Lele51g0321 514 MobiDBLite consensus disorder prediction 357 382 - -
Lele51g0321 514 FunFam RP/EB family microtubule-associated protein 195 322 - -
Lele51g0321 514 Pfam EB1-like C-terminal motif 395 433 IPR004953 GO:0008017
Lele51g0321 514 MobiDBLite consensus disorder prediction 329 349 - -
Lele51g0321 514 ProSiteProfiles Calponin homology (CH) domain profile. 202 304 IPR001715 GO:0005515
Lele51g0321 514 Pfam Calponin homology (CH) domain 205 298 IPR001715 GO:0005515
Lele51g0321 514 SUPERFAMILY EB1 dimerisation domain-like 381 438 IPR036133 GO:0008017
Lele51g0321 514 SUPERFAMILY Calponin-homology domain, CH-domain 194 320 IPR036872 -
Lele51g0321 514 FunFam Microtubule-associated protein RP/EB family member 1C 380 458 - -
Lele51g0321 514 Gene3D - 195 322 IPR036872 -
Lele51g0321 514 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 194 451 IPR027328 GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0321 Lele-ChrLele51 1823010 1827479 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0321 51 1823010 1827479 Lele51g0321 51 1823010 1827479 ECH
Lele49g0309 49 1821644 1824681 Lele51g0321 51 1823010 1827479 hybridization
Lele50g0325 50 1888388 1890082 Lele51g0321 51 1823010 1827479 hybridization