Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0312 ATGATGGGTTACAGGAACGATAGCTTCGCGGCCAAAATGGATGATAATGTTGTTCAGGAAGCTGCGTCTGGCCTGGAGAGCGTGGAGAAACTCATCAGGTTGCTTTCTCAGAGTCAGCAGCAATTCCAGTCTTCTTCTTCCTCCACTTCAAAGTCTTCCGTGGAAATCGAGATGGACTGTAAAGCTGTCGCAGATGTCGCCGTTTCCAAGTTCAAGAAGGTGATCTCTCTTCTGGGTCGAACCAGAACCGGTCACGCTCGATTTAGAAGAGCCCCTTTGCCGCCGCCGCCTCCTCCTCCTCCTATCGTTAACCAAAACCCCGACCCGCAACCTTCGGAACCCAAAGTTTATTATGCGACGCCGTTGCAGCAGATTCCACCGGCCCTTACTCAACACCAAAATATCGGCGAACAACATCCCCTGATCCCCAAAAATGGGGTGATCGAGAGGAAGGACTCGTTCAAGACCATTAATTTCTCGTATTCCTCTGCCGCGACGTCGTTAATGTCATCTCTTACTGGCGATACTGATACTAAACAACCATCCTCGTCTTCGCCGGCGACTGCCTTTCAGATAACAAATCTGTCTCAGGTCTCCTCAGCGGGGAAGCCTCCTCTTTCTTCATCTTCGCTGAAGAGAAAGTGTAGCTCCGAGAACTTGGGTTCCGGCAAGTGCGGCAGTTCCTCTAGTCGTTGCCACTGTTCTAAAAAGAGCAGAAAAATGAGGTTGAAGAGGGTAGTGCGGGTGCCCGCAATAAGCTTGAAGATGGCTGATATTCCACCTGATGATTATTCATGGAGGAAGTACGGACAGAAACCCATTAAAGGATCTCCTCATCCTAGAGGATACTACAAGTGCAGTAGCGTAAGAGGTTGTCCAGCACGCAAGCACGTAGAGCGAGCTCTGGACGATCCATCGATGTTAGTCGTCACTTATGAAGGCGATCATAATCACTCGCTCTCTGCGACCGATTCAACGAATCTCATACTGGAATCCTCTTAG 1002 0.498 MMGYRNDSFAAKMDDNVVQEAASGLESVEKLIRLLSQSQQQFQSSSSSTSKSSVEIEMDCKAVADVAVSKFKKVISLLGRTRTGHARFRRAPLPPPPPPPPIVNQNPDPQPSEPKVYYATPLQQIPPALTQHQNIGEQHPLIPKNGVIERKDSFKTINFSYSSAATSLMSSLTGDTDTKQPSSSSPATAFQITNLSQVSSAGKPPLSSSSLKRKCSSENLGSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGDHNHSLSATDSTNLILESS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0312 333 Pfam Plant zinc cluster domain 212 258 IPR018872 -
Lele51g0312 333 Pfam WRKY DNA -binding domain 262 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele51g0312 333 MobiDBLite consensus disorder prediction 195 232 - -
Lele51g0312 333 MobiDBLite consensus disorder prediction 85 113 - -
Lele51g0312 333 Gene3D WRKY domain 247 321 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele51g0312 333 SUPERFAMILY WRKY DNA-binding domain 257 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele51g0312 333 MobiDBLite consensus disorder prediction 90 108 - -
Lele51g0312 333 FunFam WRKY transcription factor 65 244 321 - -
Lele51g0312 333 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 325 IPR044810 GO:0003700
Lele51g0312 333 SMART WRKY_cls 260 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele51g0312 333 ProSiteProfiles WRKY domain profile. 255 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele51g0312 333 MobiDBLite consensus disorder prediction 195 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0312 Lele-ChrLele51 1785612 1786993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0312 12 318 WRKY Transcription Factor Family AT2G24570 46.729 4.52e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele51g0312 WRKY 7.1e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0312 51 1785612 1786993 Lele53g0146 53 1199051 1200025 CCT
Lele51g0312 51 1785612 1786993 Lele54g0147 54 1260298 1261275 CCT
Lele51g0312 51 1785612 1786993 Lele55g1340 55 19834094 19835062 CCT
Lele51g0312 51 1785612 1786993 Lele56g1289 56 16140560 16141534 CCT
Lele51g0312 51 1785612 1786993 Lele51g0312 51 1785612 1786993 ECH
Lele49g0303 49 1784960 1786803 Lele51g0312 51 1785612 1786993 hybridization
Lele50g0318 50 1853600 1855441 Lele51g0312 51 1785612 1786993 hybridization