Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0304 ATGGACGACATGGCTGCCTACTACACACAATCCCAACCCTCGACTCATCCTACTTTTCCATATTATCAACATACTCATCCGTCGTCACTTGCAGTGGTGCCACCACCACCTGGTGCGGCGCCTCCCCACCACCTTGCTTCGCAGTATGGGTCCTACCAACAACCCTTGTTTGCATCCTACGGACCTCCTAATCCTCTTCAGTATTCCGCCGACGAGGTTCGGACACTCTTCGTCGCCGGCCTTCCCGAGGATGTGAAGCCTCGCGAAATCTACAATTTGTTCCGAGAGTTTCCCGGTTACGAGTCATCACATCTTCGGAGCCCAACTGACTCGTCGCAGGCTTTTGCTTTTGCTGTATTCGCAAATCAGCAGTCTGCACTCATGGCAATGCATGCATTAAATGGGATGGTCTTTGACCTTGAAGAGGGGTCAACTCTATATATAGATTTAGCAAAATCCAACTCTAGGTCTAAGCGCACAAGAATAGATGATGAAATAGTTGGCTCAGATAAGAAGGCTAGAGGATCTTCTTTTCCAAGGGCAACTCTTGATTCCGGTGTTGGCAGCATACACATGCCTGGAATGGGTAATCCTGCTTACAACACAAACACGTATGGTTATCCATCTGCACAAAGCCAATGGTATGCTGATGGTAAAGCTTTTAATGACAGTGCAGCAGCAAATTTGAATAACTCCCCTCGCATTCCACAAAATGTGACCCCATGTCCAACTTTATTTGTGGCTAACCTGGGGCCATCTTGTACCGAGCAAGAGCTAATGCAAGTATTTTCCAGATGTCCTGGATTTTTGAAACTGAAGATGCAGAGCACATATGGAGCTCCAGTTTCATTTGTTGATTTTCAGGATGTTGCCAGTTCAACTGGAGCTCTAAACAGTCTACAAGGCACCGTTCTTTACTCCTCAGCAGCCGGCGAGGGAATGCGGTTAGCATATGCAAAATCACGGATGGGTATGCGGAAGAAGCCGAAGGACGTGGACGCTCAAGCGGATGACAAGCTCAGTGGAGGAGTCCCACGAGGGTGTCTCCAAAAGGCGTCCCTCTTTGCCCTGTCCGTCTCTCTTCTCACTCTTCTCCTAGTTTCTTCATTTCTCATGAAGATTCACTCTCTCTCTCCCCCTTGTGATCAAACTCGCCGAGAGAGAGCGATGGACGGTGAAGCGGCGGAAGGTGGAGTGAGAGATAGAGAGATGCCGGCCAGGAAAAGAGGGGCTGTTGAGCTTGAAGGAGAGAGAAGATACAAAGGGATTAGGATGAGGAAGTGGGGCAAGTGGGTCGCCGAGATTCGAGAGCCCAATAAACGATCTAGGATTTGGCTCGGTTCCTACTCCACTCCCGTCGCGGCCGCGCGGGCTTACGACACCGCCGTTTTCTATCTCAGGGGACCATCAGCCCGCCTTAATTTCCCCGGCCTTTTAGAAGGAGGTGGCGTTGGTGGGTGCGACATGTCGGCGGCTTCGATTAGGAAGAAAGCGACGGAGGTTGGCGCCAGAGTCGATGCCCTTCAGGCGGCTCTCCACCATCACCACCATGCCTCGGTGGCGCCTGAGCTCATCTCACGCAGCGCGGGTGCCGGAGCAGGCTCCGGGGAGTTTTTGGGGCGGGTTGACCTTAACAAGATACCAGAACCCGAGAATTCGGACAGCGACTGCGACTGCGAGTGA 1683 0.5181 MDDMAAYYTQSQPSTHPTFPYYQHTHPSSLAVVPPPPGAAPPHHLASQYGSYQQPLFASYGPPNPLQYSADEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSPTDSSQAFAFAVFANQQSALMAMHALNGMVFDLEEGSTLYIDLAKSNSRSKRTRIDDEIVGSDKKARGSSFPRATLDSGVGSIHMPGMGNPAYNTNTYGYPSAQSQWYADGKAFNDSAAANLNNSPRIPQNVTPCPTLFVANLGPSCTEQELMQVFSRCPGFLKLKMQSTYGAPVSFVDFQDVASSTGALNSLQGTVLYSSAAGEGMRLAYAKSRMGMRKKPKDVDAQADDKLSGGVPRGCLQKASLFALSVSLLTLLLVSSFLMKIHSLSPPCDQTRRERAMDGEAAEGGVRDREMPARKRGAVELEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPGLLEGGGVGGCDMSAASIRKKATEVGARVDALQAALHHHHHASVAPELISRSAGAGAGSGEFLGRVDLNKIPEPENSDSDCDCE 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0304 560 FunFam Ethylene-responsive transcription factor 2 418 477 - -
Lele51g0304 560 SUPERFAMILY DNA-binding domain 419 476 IPR016177 GO:0003677
Lele51g0304 560 SUPERFAMILY RNA-binding domain, RBD 73 307 IPR035979 GO:0003676
Lele51g0304 560 Gene3D - 236 330 IPR012677 -
Lele51g0304 560 SMART rav1_2 419 482 IPR001471 GO:0003700|GO:0006355
Lele51g0304 560 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Lele51g0304 560 FunFam RNA-binding protein with multiple splicing 2 71 161 - -
Lele51g0304 560 Pfam AP2 domain 419 468 IPR001471 GO:0003700|GO:0006355
Lele51g0304 560 PRINTS Ethylene responsive element binding protein signature 420 431 IPR001471 GO:0003700|GO:0006355
Lele51g0304 560 PRINTS Ethylene responsive element binding protein signature 458 478 IPR001471 GO:0003700|GO:0006355
Lele51g0304 560 CDD RRM_RBPMS_like 74 149 - -
Lele51g0304 560 ProSiteProfiles AP2/ERF domain profile. 419 476 IPR001471 GO:0003700|GO:0006355
Lele51g0304 560 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 413 555 - -
Lele51g0304 560 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 139 IPR000504 GO:0003723
Lele51g0304 560 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 307 IPR000504 GO:0003723
Lele51g0304 560 Gene3D AP2/ERF domain 418 477 IPR036955 GO:0003700|GO:0006355
Lele51g0304 560 Gene3D - 70 163 IPR012677 -
Lele51g0304 560 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 153 IPR000504 GO:0003723
Lele51g0304 560 CDD AP2 419 476 IPR001471 GO:0003700|GO:0006355
Lele51g0304 560 FunFam RNA-binding protein with multiple splicing 235 326 - -
Lele51g0304 560 SMART rrm1_1 244 313 IPR000504 GO:0003723
Lele51g0304 560 SMART rrm1_1 75 149 IPR000504 GO:0003723
Lele51g0304 560 CDD RRM_scw1_like 241 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0304 Lele-ChrLele51 1738087 1746136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0304 397 560 AP2-EREBP Transcription Factor Family AT5G67190 55.080 2.17e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele51g0304 RRM_1 1.2e-08 CL0221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0304 51 1738087 1746136 Lele53g0143 53 1168762 1169217 CCT
Lele51g0304 51 1738087 1746136 Lele54g0143 54 1233061 1233516 CCT
Lele51g0304 51 1738087 1746136 Lele55g1345 55 19862591 19863046 CCT
Lele51g0304 51 1738087 1746136 Lele56g1292 56 16170211 16170672 CCT
Lele51g0304 51 1738087 1746136 Lele51g0304 51 1738087 1746136 ECH
Lele49g0295 49 1749149 1753125 Lele51g0304 51 1738087 1746136 hybridization
Lele50g0309 50 1812410 1818960 Lele51g0304 51 1738087 1746136 hybridization