Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0294 ATGGCCGATGAAGAGCCTTCGACGACTTCCAGACGAAGGGGAAGAGGAGCCGAGGCATCGGCTCGTTCCGATGCCTTGGAACGTCTAAAAGCTCGACTCCGTGGTGGTCGCCGTTCAGATGGCGATGGATATCAAATTAAGTTGGATAACCCTATTTATGATACTGTCGCCGAGGACGAGTACAATGCGCTCGTCGCCAAACGCCGCGAAGAAGCCCGAGGCTTCATTGTGGACGATGACGGTCTTGGGTATGGGGACGAAGGGGAGGAGGAGGATTGGTCAAAAGCTGGGTTCACTCTGTCCTCTGACGAATCGGATGGCGAAGCAGAAAAGCCAAAAAGGAAGAGACAAGAAAAGAAAGATCCGCAACCGAAAAGGCCATCATCTTCCCTATCGGCTGCGGCAGCGATGATAGGGGCGCAGAGGTTGTCATCGATGTTCACTTCGTCGGTTTTTAAGAAAAGCAGGGATGATAAAGCTAAAGGATTTTCTTGTGATAGCATTGTTGACGATGTTATCGCAGAGTTTGCACCGGACGAGACTGATAGACTAAGGCGTAGACGCGGGCCAACAAATCCTTCATCTTTGCCGATTAATAATGTTAAGAGCGAGGACCCAGCAATTGGATGCCCTGATCTGACGGGAGGTCCTCTGTCGTCGGATGGTGTTGCAAATGGCAATTATGAATCTACCAGAGTTGTGAAAAATGATGGTTATGCCTTGGGTTCTGATCAAAATTACGGAGGAGTCAAAGTAGAGGCGCCTACTAAAGAATCAGAAGATGGGGGAAATATTAATTCCGATGATGGTCTGGCATCAATTATCCAAACCCATAGTGGTCCAACTAACGGAGGCGTGACTGGAGAGAAAATGTTAAAGGATGTTGAGATAGAAGCTAAACAAACAGTGGAGAAGGAGGTATTTCCTCTGAATGCGAAAGTTAAAGAAGAAGACCCTGCACTGAGTGCGACTATTGGTTGGCAGGCAGCCAAGAGCGGGGGAGATGTCAATGTTGCTGATTCACAGGTGGCCGACGAAGCTTTAAATAGTGAAGAAAACTTAGAGTTCAATCTGGAGGCTGATGGGTCGCTACCTTTCTACATACTTGATGCCTATGAGGAATTCTATGGAGCTAACATGGGTACGCTGTATCTGTTTGGGAAGGTCAAAACAGGTAATTCGTATCAGAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGTCGTCCTTTACATCACACTGATGAGATGATGGAACTTGAGAAGGATGTTGAAGAGTCTCGGATTTCTCGTACAGACTTTCACAAAAAGCTGCAAGATATGATGTCTGGTTTAAAGAATGAGATAGCAAAACAGCTGTTAGATCTGAACGCTTCAACCTTTAGTATGAAACCTGTTAAGAGGAAGTACGCATTTGAACGTTCTGAAATACCTGCTGGTGAAAATTATGTGCTGAAAATCAACTATCCATTCAAGGATCCACCTCTTCCAGTAGATCTGAAAGGAGAGAGTTTCTTTGCTCTTCTAGGAACTCATTGCAGTGCGTTGGAGCTTTTTCTAATTAAAAGAAAGATAAAGGGGCCTTCATGGCTACTGGTTTCAAACTTTTCTTCCCGCCTTGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGATCGTTGACTCTCCTAAAGACATAAGGATTTCAGCTTCCTCCAAATCCTGTTTTGAGATTCCTCCCGTGGTTGTCACAGCTATAAATTTGAAAACCATCATAAATGAAAAACAAAACTTAAACGAGATTGTCTCTGCATCCATTGTTTGCTGCCGCAGGGTCAAGATTGACACTCCCATGTTGGCTTCAGAATGGAAGAGACCTGGACTACTGACCCATTTTACTGTTGTCCGTAAGCTTGATGGAGGCATATTTCCACTGGGTTTCAACAAGGAAGTTACAGACCGAAACACAAAAGCTGGTTCAAATGTTCTGTGTGTTGAGAGCAGTGAAAGGGCTTTACTAAACCGCCTGATGATAGAATTGCACAAGTTGGATAGTGATGTTCTTGTTGGACATAACATTTCTGGATTTGACCTGGATGTTCTTCTTCACAGATGTCAGGCTTCTAAAGTGCCAAGCAGCATGTGGTCCAAAACAGGCCGCCTTAAACGGTCTGGGATGCCTAGACTTACCAGAGTAAGCACTGTTTTTGGTTCTGGAGCTACTCCTGGCATCTTGTCTTGCATTGCTGGTCGGCTTCTTTGTGATACATACTTGTGTGCTCGTGACCTATTAAAGGAGGTTAGCTACTCTTTATCTCAACTATCAAAAACTCAGCTGAATAAAGTTCGAAAGGAAGTTGCTCCACATGATGTTCCAAAAATGTTCCAATCAACAGAATCCCTTATGGAACTTATTGAGTATGGCGAGACAGATGCATGGTTGTCGATGGAACTCATGTTTCATTTGAGTGTTCTCCCCCTCACACGTCAACTGACTAATATCAGTGGTAATTTGTGGGGGAAAACACTACAGGGTGCAAGGGCACAGAGAGTGGAGTATCTTCTGTTGCATGCTTTCCATGCAAAGAAATATATTGTGCCAGACAAGATTCCTTCCCATGCAAAAGAAACAAAATTGACAAAACGCAGAGTAACTCATGTTGTTGAGGATGTTGGCTTTGACGAAGTTACTGACAATACAAACTATGACAATGATGCTCCTGACAGTGATCATGGTAAAAGCAAGAAGACTCCGTCCTATGCTGGAGGACTGGTTTTGGAGCCTAAAAGGGGTTTATATGACAAATATATATTGCTCTTGGACTTCAATAGTCTTTATCCTTCTATAATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTACAGATGGTTCTTTTCCTCGTCTGCCATCTAGCAAAACAACTGGAGTTTTGCCAGAGTTGCTGAAAAATTTGGTTCAAAGGAGGAGAATGGTGAAGTCGTGGATGAAAACTGCTTCTGGTCTTAAAGTTCAGCAACTGGACATTCAGCAACAAGCACTTAAGCTTACTGCAAACAGTATGTACGGATGTCTTGGATTTGCTAATTCAAGATTTTATGCAAAACCGCTGGCTGAGCTTATAACCCTGCAGGGAAGGGAGATATTACAAAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTGATCTATGGCGACACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCAAAAGCAAAAGCAATGGCTGGAAAAGCGATTCAAGAGGTCAACAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGAATGCTGCTGCTTAAGAAAAAGAAATATGCAGCTGTCAAGGTGCAGTTCAAAGATGGCACGCCATATGAGGTTATTGAACGTAAGGGTCTGGACATTGTTCGTCGTGACTGGAGCCTATTATCTAAAGAAATAGGAGATTTTTGCCTCGGTCAAATTTTGTCAGGAGGGTCATGTGAGGATGTTGTCGAATCAATTCACAGCTCTCTTTGTAAGGTGCAAGAAGAGATGAGGAGTGGACAAGTGCCGTTAGAGAAATATATCATTACTAAGACATTGACTAAACCTCCTGAAGCCTATCCAGACGCCAAAAATCAACCGCATGTTCTTGTGGCACAAAGATTGAAGCAAAAGGGCTACTCCACTGGTTGCTCTGTTGGTGATGCGATCCCTTACATTATTTGCTATGAGCAGGGCAGTAATTCAAGCAGTGGAACAAGTATTGCTCAACGTGCTAGACATCCCGAGGAACTAAAACAAGAACAAGGGAAATGGATGATTGACATTGATTATTATCTCTCACAACAGCTTCATCCGGTTGTATCACGTCTCTGTGCATCAATTCAGGGCACGAGTCCAGAAAGACTGGCTGATTGTTTAGGGCTTGATGCGTCAAAATTTCAACACAAGTCAAATGAAGCCTTCAATGGTGATCCTTCAAGTTCACTCTTGTTTGCTGCCGATGACAAAGAGAGGTTTCAAGGATGTGAGCCGTTGGCTTTGTCATGTCCAAGCTGCTCTGGTACTTTTGACTGTCCTCCTATCTTCAAATCTATTTGTGAAGGTGAAAAGCCAACAAGCTCAGGCATGGGGGAATCAAGCTATAATTTCTGGCGTAAGCTGCGCTGTCCTACGTGCCCAGAAGAAGATGGTGTTGGCAGAATTTCTCCTGCAATGATTGCCAATGAGGTCAAAAGGCAAGCAGATAAGTTTATTTCAATGTACTACAGAGGCTTGTTAATGTGCGACGATGAAACTTGTAAGCATTCAACACGAAGTATCAACCTTCGGCTGGTTGGTGATTCTGAAAGAGGAACTGTTTGTCCAAATTACCCTCGCTGCAACGGGCATCTTCTAAGACAGTACACGGAGGCAGACTTGTATAAACAGCTCTCGTATTTTTGCCATGTGTTGGATACCGTTTCCTGTATAGAAAAGATGGAGGTTAAATCTAGGATACCGCTGGAGAAAGAGTTATCGAAAATTAGGCCAATGGTTGATCTGGCAGCATCTACGATACAGAAGATTCGGGATCGGTGTGCCTTTGGGTGGGTACAGATGCAGGACTTGGTCGTCACTGTATGA 4644 0.4356 MADEEPSTTSRRRGRGAEASARSDALERLKARLRGGRRSDGDGYQIKLDNPIYDTVAEDEYNALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESDGEAEKPKRKRQEKKDPQPKRPSSSLSAAAAMIGAQRLSSMFTSSVFKKSRDDKAKGFSCDSIVDDVIAEFAPDETDRLRRRRGPTNPSSLPINNVKSEDPAIGCPDLTGGPLSSDGVANGNYESTRVVKNDGYALGSDQNYGGVKVEAPTKESEDGGNINSDDGLASIIQTHSGPTNGGVTGEKMLKDVEIEAKQTVEKEVFPLNAKVKEEDPALSATIGWQAAKSGGDVNVADSQVADEALNSEENLEFNLEADGSLPFYILDAYEEFYGANMGTLYLFGKVKTGNSYQSCCVVVKNMQRCVYAIPSRPLHHTDEMMELEKDVEESRISRTDFHKKLQDMMSGLKNEIAKQLLDLNASTFSMKPVKRKYAFERSEIPAGENYVLKINYPFKDPPLPVDLKGESFFALLGTHCSALELFLIKRKIKGPSWLLVSNFSSRLASQRVSWCKFEVIVDSPKDIRISASSKSCFEIPPVVVTAINLKTIINEKQNLNEIVSASIVCCRRVKIDTPMLASEWKRPGLLTHFTVVRKLDGGIFPLGFNKEVTDRNTKAGSNVLCVESSERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRCQASKVPSSMWSKTGRLKRSGMPRLTRVSTVFGSGATPGILSCIAGRLLCDTYLCARDLLKEVSYSLSQLSKTQLNKVRKEVAPHDVPKMFQSTESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPSHAKETKLTKRRVTHVVEDVGFDEVTDNTNYDNDAPDSDHGKSKKTPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSTDGSFPRLPSSKTTGVLPELLKNLVQRRRMVKSWMKTASGLKVQQLDIQQQALKLTANSMYGCLGFANSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKAIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLSKEIGDFCLGQILSGGSCEDVVESIHSSLCKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVLVAQRLKQKGYSTGCSVGDAIPYIICYEQGSNSSSGTSIAQRARHPEELKQEQGKWMIDIDYYLSQQLHPVVSRLCASIQGTSPERLADCLGLDASKFQHKSNEAFNGDPSSSLLFAADDKERFQGCEPLALSCPSCSGTFDCPPIFKSICEGEKPTSSGMGESSYNFWRKLRCPTCPEEDGVGRISPAMIANEVKRQADKFISMYYRGLLMCDDETCKHSTRSINLRLVGDSERGTVCPNYPRCNGHLLRQYTEADLYKQLSYFCHVLDTVSCIEKMEVKSRIPLEKELSKIRPMVDLAASTIQKIRDRCAFGWVQMQDLVVTV 1547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0294 1547 TIGRFAM pol2: DNA polymerase (pol2) 362 1298 - -
Lele51g0294 1547 SUPERFAMILY DNA/RNA polymerases 863 1315 IPR043502 -
Lele51g0294 1547 FunFam DNA polymerase 978 1027 - -
Lele51g0294 1547 MobiDBLite consensus disorder prediction 244 287 - -
Lele51g0294 1547 CDD DNA_polB_alpha_exo 579 830 - -
Lele51g0294 1547 MobiDBLite consensus disorder prediction 1 25 - -
Lele51g0294 1547 MobiDBLite consensus disorder prediction 104 125 - -
Lele51g0294 1547 Gene3D - 366 565 - -
Lele51g0294 1547 MobiDBLite consensus disorder prediction 269 284 - -
Lele51g0294 1547 MobiDBLite consensus disorder prediction 183 224 - -
Lele51g0294 1547 Pfam DNA polymerase family B 838 1300 IPR006134 GO:0000166|GO:0003677
Lele51g0294 1547 Pfam DNA Polymerase alpha zinc finger 1340 1543 IPR015088 GO:0003887|GO:0006260
Lele51g0294 1547 Gene3D - 579 889 IPR036397 GO:0003676
Lele51g0294 1547 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1546 - -
Lele51g0294 1547 MobiDBLite consensus disorder prediction 898 920 - -
Lele51g0294 1547 Gene3D Helix hairpin bin 976 1027 - -
Lele51g0294 1547 Gene3D Palm domain of DNA polymerase 906 1131 IPR023211 -
Lele51g0294 1547 PRINTS DNA-directed DNA-polymerase family B signature 937 950 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele51g0294 1547 PRINTS DNA-directed DNA-polymerase family B signature 1013 1025 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele51g0294 1547 PRINTS DNA-directed DNA-polymerase family B signature 1066 1074 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele51g0294 1547 Gene3D - 406 532 - -
Lele51g0294 1547 FunFam DNA polymerase 1144 1330 - -
Lele51g0294 1547 ProSitePatterns DNA polymerase family B signature. 1068 1076 IPR017964 GO:0000166|GO:0003676
Lele51g0294 1547 SUPERFAMILY Ribonuclease H-like 361 867 IPR012337 -
Lele51g0294 1547 Coils Coil 1094 1114 - -
Lele51g0294 1547 Gene3D - 1144 1329 IPR042087 -
Lele51g0294 1547 SMART polmehr3 579 1080 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele51g0294 1547 Pfam DNA polymerase family B, exonuclease domain 395 773 IPR006133 -
Lele51g0294 1547 CDD POLBc_alpha 913 1316 IPR045846 GO:0003887|GO:1902975
Lele51g0294 1547 Gene3D DNA Polymerase alpha, zinc finger 1339 1532 IPR038256 -
Lele51g0294 1547 FunFam DNA polymerase 1339 1533 - -
Lele51g0294 1547 FunFam DNA polymerase 579 892 - -
Lele51g0294 1547 MobiDBLite consensus disorder prediction 76 135 - -
Lele51g0294 1547 FunFam DNA polymerase 406 532 - -
Lele51g0294 1547 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0294 Lele-ChrLele51 1660733 1671853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0294 1 1545 Core DNA Replication Machinery Family AT5G67100 60.966 0.0 1890
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0294 51 1660733 1671853 Lele51g0294 51 1660733 1671853 ECH
Lele49g0283 49 1660076 1671134 Lele51g0294 51 1660733 1671853 hybridization
Lele50g0294 50 1716034 1718224 Lele51g0294 51 1660733 1671853 hybridization