Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0280 ATGTCCTCCCAAAGATCGGTCCCGGCGCCGTTTCTGACGAAGACGTACCAGTTGGTGGATGATCCGGGCACCGACGACGTCATATCGTGGGGTGAAAGTGGGAACACGTTCGTGGTGGGGAAGCATGCGGATTTTGCCAAGGATTTGCTTCCCAACTATTTCAAGCACAACAACTTCTCAAGCTTCGTACGCCAGCTCAACACCTATGGATTCCGGAAGATCGTTCCTGACAAATGGGAATTCGCGAACGAATATTTCAAACGAGGACAGAAGGAGCTGTTGGCGGAGATCAAACGTCGGAAACCCGCGGTTCAATCGGCGGCGCAGGAGCCTGCGGCGTCGAACTCCGGCGGGGACGACATGGGATCGACCTCCACTTCGTCACCGGATTCGAAGAATCTGGGAACCGTGGAGACGACGGGTTGTCAAATGGCGAATTTATCGGGGGAGAACGAGAAATTGAGGAAGGATAACGAGATGCTGAGCTGGGAGCTGGCGCAGGAGAAGAAGCAGTGCGAGGAGCTGATAAGTTTCCTGAAGGAGCACGTGAAGATGGGGCCGGATCAGATCCAACGGATCATGCGGCAAGGAAGTAGTGGGTCCAGCCGCAAACAGGAAGGCGAAGATGACGACGAAAACGCGGTAGGTGAAGGGGAGGGGTCTGGTGGGGAAAGCTTGAAGCTGTTTGGGGTTAGGTTGAACACAAGCCATGGCAGCGCCTCCAACACCAACAGCAAGAGAGGGCGCGAAGACCAAATAGGGTGCGGTGGCCCTCACTCTAATAAGCAGCTGAAAACTGTTGACTTTGTTTCACCCGTGATGATGAAGAGCAGCAAGAGGAAGATGTCGAAATCAGACCTGGACATCCCCCGCATTTTGGAGCGATTTCGATCGTCGTTTCTGGGAGAAGGGAACGGTCAAGCTGGGATTCCAGCGTTGAACTTGCCCTCCCAAAAAGTCAAAAACGCGTCGTTTATTTTGCCCAGAGGGAGACGGCTGCGATCGCTTCTCACCACGGACGGTCCAGATGAACTCAATCGGAAAGATGGTAAGTTTTCCTCCGTCTCCTCCTCTGTGTCTCTGGGCCCGTTATATAGAGGAGAATCTACGATATTTCATAAACCTAGAGGACGTCATCATGGAATTACCCAACAGAAGAAGCAGGAGATTAGGGAAGCATTTGAATTATTTGACACGGATGGTTCAGGGACCATTGATGCCAAGGAGCTGAATGTTGCCATGAGGGCCCTTGGTTTTGAGATGACAGAAGAGCAAATTAATCAAATGATAGCAGATGTGGACAAGGATGGCAGTGGAGCAATTGAATATGATGAGTTCGAGCATATGATGACAGACAAAATTGGAGAAAGGGACACCAGGGAAGAGCTCATGAAAGCTTTCAAGATTATTGATCAAGATGGAAATGGGAAGATATCTAAAGCAGACATTCAGAACATTGCAAAAGAGCTAGGTGAAAGTTTTACTGCCAGAGACATTCAAGACATGATTGAGGAAGCAGACCTGGATAATGATGGGGAGGTGAATGTAGATGAGTTCATCAGGATGATGAAGAGAACTAGCTATGGTTACTAG 1593 0.5003 MSSQRSVPAPFLTKTYQLVDDPGTDDVISWGESGNTFVVGKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKELLAEIKRRKPAVQSAAQEPAASNSGGDDMGSTSTSSPDSKNLGTVETTGCQMANLSGENEKLRKDNEMLSWELAQEKKQCEELISFLKEHVKMGPDQIQRIMRQGSSGSSRKQEGEDDDENAVGEGEGSGGESLKLFGVRLNTSHGSASNTNSKRGREDQIGCGGPHSNKQLKTVDFVSPVMMKSSKRKMSKSDLDIPRILERFRSSFLGEGNGQAGIPALNLPSQKVKNASFILPRGRRLRSLLTTDGPDELNRKDGKFSSVSSSVSLGPLYRGESTIFHKPRGRHHGITQQKKQEIREAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIEYDEFEHMMTDKIGERDTREELMKAFKIIDQDGNGKISKADIQNIAKELGESFTARDIQDMIEEADLDNDGEVNVDEFIRMMKRTSYGY 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0280 530 CDD EFh 389 451 IPR002048 GO:0005509
Lele51g0280 530 Pfam EF-hand domain pair 461 524 IPR002048 GO:0005509
Lele51g0280 530 Pfam EF-hand domain pair 388 450 IPR002048 GO:0005509
Lele51g0280 530 SMART efh_1 498 526 IPR002048 GO:0005509
Lele51g0280 530 SMART efh_1 389 417 IPR002048 GO:0005509
Lele51g0280 530 SMART efh_1 425 453 IPR002048 GO:0005509
Lele51g0280 530 SMART efh_1 462 490 IPR002048 GO:0005509
Lele51g0280 530 Gene3D - 452 529 - -
Lele51g0280 530 SUPERFAMILY EF-hand 379 525 IPR011992 -
Lele51g0280 530 ProSitePatterns HSF-type DNA-binding domain signature. 50 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele51g0280 530 ProSiteProfiles EF-hand calcium-binding domain profile. 494 529 IPR002048 GO:0005509
Lele51g0280 530 ProSiteProfiles EF-hand calcium-binding domain profile. 385 420 IPR002048 GO:0005509
Lele51g0280 530 MobiDBLite consensus disorder prediction 102 137 - -
Lele51g0280 530 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Lele51g0280 530 Pfam HSF-type DNA-binding 11 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele51g0280 530 ProSitePatterns EF-hand calcium-binding domain. 471 483 IPR018247 -
Lele51g0280 530 FunFam Heat stress transcription factor B-4 3 101 - -
Lele51g0280 530 SMART hsfneu3 7 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele51g0280 530 SUPERFAMILY "Winged helix" DNA-binding domain 8 100 IPR036390 -
Lele51g0280 530 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Lele51g0280 530 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 213 IPR027725 -
Lele51g0280 530 ProSiteProfiles EF-hand calcium-binding domain profile. 458 493 IPR002048 GO:0005509
Lele51g0280 530 MobiDBLite consensus disorder prediction 195 262 - -
Lele51g0280 530 ProSitePatterns EF-hand calcium-binding domain. 507 519 IPR018247 -
Lele51g0280 530 PRINTS Heat shock factor (HSF) domain signature 11 34 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele51g0280 530 PRINTS Heat shock factor (HSF) domain signature 49 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele51g0280 530 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele51g0280 530 FunFam probable calcium-binding protein CML20 365 452 - -
Lele51g0280 530 ProSitePatterns EF-hand calcium-binding domain. 398 410 IPR018247 -
Lele51g0280 530 Coils Coil 144 171 - -
Lele51g0280 530 MobiDBLite consensus disorder prediction 232 249 - -
Lele51g0280 530 Gene3D - 3 101 IPR036388 -
Lele51g0280 530 MobiDBLite consensus disorder prediction 108 137 - -
Lele51g0280 530 CDD EFh 462 524 IPR002048 GO:0005509
Lele51g0280 530 FunFam Centrin 2 453 529 - -
Lele51g0280 530 Gene3D - 373 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0280 Lele-ChrLele51 1583882 1590041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0280 361 529 EF-hand Containing Proteins AT3G50360 74.556 4.37e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele51g0280 HSF_DNA-bind 1.6e-31 CL0123