Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0261 ATGCGTTGGTTACCTTCCCTTTCCCTTTCCCATTCTCATGGTCCCAAATCCTCCTCTGCCTCTTCTTCTTTTTCCACCTCCGACGTTGACCACCATAAGAAGAAGTCCGCCGATGCCACCCGCGTTTCGGGTGGCGTTTGGCCTTTTGGTACCGGCAAAAAGACTAGCCGCTCCAAGAAGCTCCGACCTATAGCCGACGTCGATGGCAAGTCCCCCACCAAGGGGCATGATTCCTACGATGACGTCATTGTGCCTTTGGTTCATTTCCCGACCCCCTTTGATCTCCAGTTTAGTCGTTCCAATACAACCTCTTCCTTTCCCCCCTCCGTCGCGCCTCAACCCTTGCCCTTGCCGGACCCCGCGCTTTCTCGTCAGAGAGACGCCGATTGCCCTTTACCTTCATCGAAAGATGTGCCAGGACCCAGCAGCGCCGCCAAAGGGGTAGAGCGCGATCGAGCTGATGGCGTGATGGTCGGCGTCTCCTCTGTTTTCCGAATTCGGAGTGTATTTGGTAGCCCTGGCGTAGGAAAGAATAAGGGGCAGGGTGAAACAGGGTCATCAAGGGTGGTGCGTCAGGATCTAAGTGGTAGTGAAAGTAATCGAGATAACTTCCGCATCAGCTTCTCAACTTGGAGTGCTCCAGTTAGTCCTTTGAGCAGCCCCTTGGTGAGCCCGAACAATGGAAGAAATAGTGATTTTGTTCAATACCATTATGTGTGTCCCCCGCCAAATCAATATTGGTCGGCACCAGAGATGGTCACATCTGATGCATCATCAGGGACGACGCCTCCTGCATTCTTTGACTTAACTACATTAACCACTGATACTTCTCCTCATCACAGTCCACGTGGGAAAAGCCCTAACCAAAATCTCAAAAGCCGAAGTGGAGCTTCCTCACCGGTACGTCCCAGATTATCCCTCGAGACTTCAGTAGCACGTCGTGATTTCAGTGCCCCCTCTCTCAGTGTTCACCCCTTACCATTGCCTCCTGGGGGACCCTTGCTTTCCCCATCTCCTAAATTATCCCCAACTCGGCCCAAATTAGAGTCTTCTTCAATGAAAAGCCAATGGCAGAAAGGGAAACTAATTGGGCGTGGTACTTTTGGAAGTGTTTATGTTGCTACCAATAGAGAAACTGGAGCATTATGTGCGATGAAGGAAGTAGAAATATTTCCTGATGACCCCAAATCCGCCGAGTGTATAAAACAGTTAGAGCAGGAAATCAAAGTTCTTAGCCAGCTGAAACATACAAACATTGTGCAGTATTATGGCAGTGAAATCGTTGAAGACCGGTTTTATATTTATCTGGAATACGTTCATCCTGGATCAATAAATAAATATGTCCGGGAACATTGTGGTGCCATAACAGAATCTGTTGTTCGAAATTTTACTCGTCATATTCTTTCAGGCTTGGCTTACTTGCATGGCAAAAAAACAATTCATAGGGACATCAAAGGGGCTAACTTGCTTGTTGATTCTACTGGGGTTGTTAAGCTTGCTGACTTTGGGATGGCCAAGCATCTTACTGGACATGCGGCTGATCTTTCTTTGAAGGGAAGTCCATACTGGATGGCTCCTGAGCTTATGCTGGCAGTGATGCAAAAAGACAACAGCTCTGATCTAGCTTTAGCTGCCGACATTTGGAGTTTGGGTTGCACAATCATAGAAATGCTTGCAGGGAAGCCTCCTTGGAGCGAATACGAAGGAGCTGCGGCTATGTTTAAGGTTATGAACGATACCCCTCCTATACCTGAAACATTGTCACCGGAAGGTAAAGACTTCCTGAGGTGCTGCTTTAAGAGAAATCCAGCAGAGCGGTCAACTGCTTCAGCTTTACTTGAACATGGGTTCTTGAAAAATGCACAACAGCTTAATGTTTCATATTCCATGCAGTCTCATAATGGAGTAAATTTGATGGACAGACCCCTTAGTCCCAGAGGGCAATGTGTATATTTATCTGATCAGTTGCCAACTACCAGTGTGCAGATTGCAAAAGGGAAGGCCAACGATAGGTGA 2016 0.4777 MRWLPSLSLSHSHGPKSSSASSSFSTSDVDHHKKKSADATRVSGGVWPFGTGKKTSRSKKLRPIADVDGKSPTKGHDSYDDVIVPLVHFPTPFDLQFSRSNTTSSFPPSVAPQPLPLPDPALSRQRDADCPLPSSKDVPGPSSAAKGVERDRADGVMVGVSSVFRIRSVFGSPGVGKNKGQGETGSSRVVRQDLSGSESNRDNFRISFSTWSAPVSPLSSPLVSPNNGRNSDFVQYHYVCPPPNQYWSAPEMVTSDASSGTTPPAFFDLTTLTTDTSPHHSPRGKSPNQNLKSRSGASSPVRPRLSLETSVARRDFSAPSLSVHPLPLPPGGPLLSPSPKLSPTRPKLESSSMKSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVEIFPDDPKSAECIKQLEQEIKVLSQLKHTNIVQYYGSEIVEDRFYIYLEYVHPGSINKYVREHCGAITESVVRNFTRHILSGLAYLHGKKTIHRDIKGANLLVDSTGVVKLADFGMAKHLTGHAADLSLKGSPYWMAPELMLAVMQKDNSSDLALAADIWSLGCTIIEMLAGKPPWSEYEGAAAMFKVMNDTPPIPETLSPEGKDFLRCCFKRNPAERSTASALLEHGFLKNAQQLNVSYSMQSHNGVNLMDRPLSPRGQCVYLSDQLPTTSVQIAKGKANDR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0261 671 MobiDBLite consensus disorder prediction 1 78 - -
Lele51g0261 671 ProSiteProfiles Protein kinase domain profile. 357 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele51g0261 671 MobiDBLite consensus disorder prediction 253 306 - -
Lele51g0261 671 ProSitePatterns Protein kinases ATP-binding region signature. 363 386 IPR017441 GO:0005524
Lele51g0261 671 MobiDBLite consensus disorder prediction 172 201 - -
Lele51g0261 671 FunFam Mitogen-activated protein kinase kinase kinase 5 354 654 - -
Lele51g0261 671 SUPERFAMILY Protein kinase-like (PK-like) 348 655 IPR011009 -
Lele51g0261 671 Gene3D Transferase(Phosphotransferase) domain 1 353 641 - -
Lele51g0261 671 Pfam Protein kinase domain 358 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele51g0261 671 MobiDBLite consensus disorder prediction 320 356 - -
Lele51g0261 671 MobiDBLite consensus disorder prediction 10 26 - -
Lele51g0261 671 MobiDBLite consensus disorder prediction 59 77 - -
Lele51g0261 671 MobiDBLite consensus disorder prediction 323 340 - -
Lele51g0261 671 MobiDBLite consensus disorder prediction 100 151 - -
Lele51g0261 671 SMART serkin_6 357 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele51g0261 671 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 18 628 - -
Lele51g0261 671 MobiDBLite consensus disorder prediction 253 305 - -
Lele51g0261 671 MobiDBLite consensus disorder prediction 179 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0261 Lele-ChrLele51 1493101 1496905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0261 197 657 MAP Kinase Kinase Kinase AT5G66850 62.963 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele51g0261 Pkinase 3.5e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0251 49 1467069 1471569 Lele51g0261 51 1493101 1496905 hybridization
Lele50g0263 50 1537487 1542651 Lele51g0261 51 1493101 1496905 hybridization