Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0258 ATGCATCAAGAATCTGTCCCTTTTCCACCTGCAATTGTTCATCAATCTGCTGTCTCAATTAACAAAAGAAAGATAGATGCCGTTAAAGAGGACTTTTTGTTTGAAACCAAAGTCCCGAACGGGGAAAGGTTAAAGACGGAACCGATGGTGGTGAAAGAGAAGGCATCTTTCTGGTCCATGGTCATGTGTCTTTCCCCATCACTGGGAATCCTTATCCCCAAACAAGGGGATCAGGGCCCAAAACATTATAATATCTCACATGTCACAAACCACTCGATCTCCGCCACGTGTCGACATTCTGGCTGGCCCATCCTTAAAGTTCATGCAATCCCAGGCACACCGACACTCAGTTGTGACAGAACAATACCCCCTAAGATAGACTTGAGCTTGGATTTGAGTTTGTCTTTTGTTCCCAAAACCATTTCTGAATTTCTTGTGGCCACTCCAAAACAAATTAGAGAATTAATGCAGGTGGAAGCCCTAACAAATGATGAAGTGAAAAGCCATTTGCAAAAATACAGACTTCATGTGAGAAGACTTCCGTCTTCAACAACTAACCAAGGAAATGGCTTGTGGATGGTAGAAAATCAATGTGGAGAAAAGTCAAAAGTAAACTTATCGCAGTCTAGTTCTCCCCAAGGACCTCTCTTACTTGCAGGTTCTGCTAAGGGGCTATCGAGTTCTGGAGATGGCGAAGAAGATGAGAAATCAGATTGCCATAGTTGGAAAGGTGGCTTGCACCAGCAAGCAGAAGCTGATGTACTGTCTTAA 771 0.4345 MHQESVPFPPAIVHQSAVSINKRKIDAVKEDFLFETKVPNGERLKTEPMVVKEKASFWSMVMCLSPSLGILIPKQGDQGPKHYNISHVTNHSISATCRHSGWPILKVHAIPGTPTLSCDRTIPPKIDLSLDLSLSFVPKTISEFLVATPKQIRELMQVEALTNDEVKSHLQKYRLHVRRLPSSTTNQGNGLWMVENQCGEKSKVNLSQSSSPQGPLLLAGSAKGLSSSGDGEEDEKSDCHSWKGGLHQQAEADVLS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0258 256 MobiDBLite consensus disorder prediction 203 256 - -
Lele51g0258 256 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 146 176 IPR006447 GO:0003677
Lele51g0258 256 Gene3D - 105 181 - -
Lele51g0258 256 MobiDBLite consensus disorder prediction 228 242 - -
Lele51g0258 256 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 146 243 IPR044787 GO:0003700|GO:0006355
Lele51g0258 256 SUPERFAMILY Homeodomain-like 147 179 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0258 Lele-ChrLele51 1465097 1470995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0258 146 193 G2-like Transcription Factor Family AT1G13300 60.345 3.24e-14 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele51g0258 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0110 54 881742 889281 Lele51g0258 51 1465097 1470995 CCT
Lele55g1377 55 20207165 20208892 Lele51g0258 51 1465097 1470995 CCT
Lele56g1322 56 16492798 16503171 Lele51g0258 51 1465097 1470995 CCT
Lele49g0248 49 1444066 1445650 Lele51g0258 51 1465097 1470995 hybridization
Lele50g0261 50 1515896 1529110 Lele51g0258 51 1465097 1470995 hybridization