LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g0221	ATGGGAATAGCAACACCGCCACTTGCATCAATAATCTCTTCCCCCAAGTCCAAGACGACCCACCATTCCTTTTTTGCCTTCGACCATAAGTCCGATTTTTCCAATTCTATGTCCATGTCCCAGGATTATCATCAAGCAGGAATCTTCAGTTTCTCGAACGGATTCGAGAGATCCGCTGTAGCTCAGCAGCCTCATCAGCAGCAGCAGATCCGGAGGGACAAAGTGAGGGTGCAAGGCTTCTACCCAACACCGCCGTTAGTGGGTATTGAGGAAGAGGAATCCGGAGGCCTTCCCGTGTACGAAACCGCCGGTATGTTATCGGAGATGTTTAGTTTCCCTACCACCGGCGCCACCTCTACTGAATTGTTGGAACAACAACCCTTGACGGCGACGTATCGATCATTCAGCAGGCCACAGCAGGCTGCTGCGATGGGCAGTGAGTGGTACGGAGACCAACACGGCATGATAAGTGGTCTGGGAGATTCGAAGAATCCCCATCACCACCACCCTCATCAGCGTCAGATTTCAAGCATGAATGCAGCGGATTCAGCGGCTGCCATGCAGCTTTTTCTCATGAACCCTCAAACCAGATCGCCTTCCCCTCCTCACAATCCTTCCACCAGTTCTTCCACCCTCAACATGTTGCTCCCCAATCCTTCCTCTTCTCTACAAGAATTCCCCGCAGGACCCGCAACGGGAGGAGCTTTTGGTCAATTCACATGGCTTCCATTTTCTGAAGCAGGTTCTCAAAACGCCAACACCAACCAGAATCCGGGTGAAATCGGAGGGGTTGTGGAAGGCCAAGGTCTTTCTTTATCGTTGTCGTCTACACTAGAAGCAGCGAAAGCCGAGGAACTGAGAATGGGTGATAGCGGGTTTCTCAATTATTACAGTCAAAGTGCAGCAGGAGGGTCCTCATCTGCTCAGTGTCCGTACAAGAATTTGGGTGGAGGTCAAACTCAAACTCACACATTGCATTTACAAGGAGTAGCTCAGAACCACCAAGTTCATGCTGGTTTCGGGTCATCGTTAGGGGTTGCAAATGTGCTGAGGAACTCCAAGTATGTGAAGCCTGCTAAAGAATTGCTTGAAGAATTCTGCAGCGTTGGGAGGGGTCAGTTCAAGAAGAACAAATTCACCAGGCAGAACTCCAACCCTAATTCCAATTCCGCTGTTGCCGCTGCCGCTTCTTCATCTTCAACAAAAGATCCTCCACCTTTGTCAGCCGCAGACAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCCATGCTTGACGAGGTGGACCGAAGATACAGTCACTACTGCGAGCAAATGCATATGGTGGTGAACTCGTTTGACTTGGTGATGGGTTTTGGGGCGGCGGTACCATACACGGCTCTGGCACAGAAAGCAATGTCAAGGCATTTCCGGTGTCTGAAGGATGCCATATCAGCACAACTGAAGCACAGTTGCGAGTTGCTGGGAGAGAAAGATGGGTTGGGATCGTCGGGTTTGACTAAGGGCGAGACCCCAAGGTTGAAGCTTCTGGAGCAAAGCCTGAGGCAGCAGAGAGCCTTCCACCAGATGGGCATGATGGAGCAAGAGGCTTGGAGACCCCAGCGAGGCCTTCCTGAACGTTCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTCCATCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCTAGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAACGCGAGGGTAAGGTTGTGGAAACCCATGGTGGAGGACATGTATCAACAGGAGCAAAAAGGAGATGAGGATGAAGAAGAGAGGGATAAAAGCACCAATAATCGTAACATGGCTCAAACTCCGACGCCTACCACTACCACCACAACCACAGCTACCACCACATCAACAGCAACGGCATCAGCGTCCGCGCCAGCAAAAAGATCTGACGTCAGTGCCACCGAAAGAGACCCCTCCCTCGTTGCAATCAATAGACAAGCCCTCTCGGAAAACCAAGCAAAGCAACAGTCGTCCACCACCACAACCACCATGGCCCCCAGCACCACCGCCTCTGAGGTGGCGCCACCCGTGTCCCAATGTTTCCGATCAGACCTGCCCCTGCACAGTCTTGATGACACGTGTCGTCATGGCAGCATGGTTGCAGGAGACTGCGGCACCGCCTCGGCCACTGCTAACAATATTGGATCTACTCTGATAAGATTCGGGACCACCGCCGGTGATGTGTCGCTCACCCTAGGGCTACGCCACGCTGGGAACATCCCTGACACTTCTCCTTTCTCCGTTAGAGATTTTGGAGGCATTTGA	2331	0.5161	MGIATPPLASIISSPKSKTTHHSFFAFDHKSDFSNSMSMSQDYHQAGIFSFSNGFERSAVAQQPHQQQQIRRDKVRVQGFYPTPPLVGIEEEESGGLPVYETAGMLSEMFSFPTTGATSTELLEQQPLTATYRSFSRPQQAAAMGSEWYGDQHGMISGLGDSKNPHHHHPHQRQISSMNAADSAAAMQLFLMNPQTRSPSPPHNPSTSSSTLNMLLPNPSSSLQEFPAGPATGGAFGQFTWLPFSEAGSQNANTNQNPGEIGGVVEGQGLSLSLSSTLEAAKAEELRMGDSGFLNYYSQSAAGGSSSAQCPYKNLGGGQTQTHTLHLQGVAQNHQVHAGFGSSLGVANVLRNSKYVKPAKELLEEFCSVGRGQFKKNKFTRQNSNPNSNSAVAAAASSSSTKDPPPLSAADRIEHQRRKVKLLSMLDEVDRRYSHYCEQMHMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQLKHSCELLGEKDGLGSSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQEQKGDEDEEERDKSTNNRNMAQTPTPTTTTTTTATTTSTATASASAPAKRSDVSATERDPSLVAINRQALSENQAKQQSSTTTTTMAPSTTASEVAPPVSQCFRSDLPLHSLDDTCRHGSMVAGDCGTASATANNIGSTLIRFGTTAGDVSLTLGLRHAGNIPDTSPFSVRDFGGI	776

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g0221	776	MobiDBLite	consensus disorder prediction	598	616	-	-
	Lele51g0221	776	MobiDBLite	consensus disorder prediction	157	178	-	-
	Lele51g0221	776	SMART	HOX_1	532	596	IPR001356	GO:0003677
	Lele51g0221	776	FunFam	BEL1-like homeodomain protein 4	535	597	-	-
	Lele51g0221	776	MobiDBLite	consensus disorder prediction	617	650	-	-
	Lele51g0221	776	MobiDBLite	consensus disorder prediction	194	229	-	-
	Lele51g0221	776	SMART	prehox3	344	480	IPR006563	-
	Lele51g0221	776	CDD	homeodomain	532	593	IPR001356	GO:0003677
	Lele51g0221	776	Pfam	Associated with HOX	349	479	IPR006563	-
	Lele51g0221	776	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	195	616	-	-
	Lele51g0221	776	MobiDBLite	consensus disorder prediction	666	697	-	-
	Lele51g0221	776	Pfam	Homeobox KN domain	549	588	IPR008422	GO:0003677\|GO:0006355
	Lele51g0221	776	MobiDBLite	consensus disorder prediction	378	413	-	-
	Lele51g0221	776	MobiDBLite	consensus disorder prediction	194	227	-	-
	Lele51g0221	776	Gene3D	-	535	597	-	-
	Lele51g0221	776	SUPERFAMILY	Homeodomain-like	534	599	IPR009057	-
	Lele51g0221	776	ProSiteProfiles	'Homeobox' domain profile.	529	592	IPR001356	GO:0003677
	Lele51g0221	776	MobiDBLite	consensus disorder prediction	378	405	-	-
	Lele51g0221	776	MobiDBLite	consensus disorder prediction	598	697	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g0221	Lele-ChrLele51	1240346	1245745	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g0221	38	579	Homeobox Transcription Factor Family	AT4G36870	51.783	2.08e-147	441

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Lele51g0221		POX	2.5e-50	No_clan