Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0219 ATGGATGCCCTGCAAACACTTACGAGCCTTGCTTATGCATTCGACGCCTCGGTTTCCACATCTATCGCCTCCAAATCTAGCAGTGCCCAAGCTGCCTTTCAATGGGGTGGAACCATCTTCGACTTGTTTTTGTTGATCCTGAATCGATTTGGACAGGACTCACGCACACAAAGTACCCTTTTAGTGTTATATCTCTTCATAAGTTTACCAGAAGTGCTGTTCAAAATTTTAAGGGAACAATTTGGCTGCTGGATTGCTTTCCTTGCAATTGTAGCAAACATGTTTTTCCCTCACACTTTTCCAGTTCCAGTTTCGCGTTTTCTGCTATTTGTGATAGCTCCAAATTGGATTGCTCACGGACTAAGAAATAGCATGGTGGGCGGAGTTTTTTGTCTGGCAATAGGCATAGTTGTCATAATTGAGATTCGTGGAAATGGGGGATTCCGAAACTGCAGCTGTAATTTCCGCTGCTTGGCCTATTATCTTTGTATAGCATTTCTCTTCTGCTTCACTATATTGTACCTGTGCTTAGGAAATTGCTGCCCTCTGATTCTGGGGCAGCAACCTTATTATATTGGTTTGGGCACAGTGGCCTGTCCAAGAAAGGGCAATTCAAAATATATTCGTGGTTACCCTTGCAACGGGGTTGCTCATAGCTGCCAAGCTTACCTCATCTTCAGATCTCAACCCCTTTACTGCTCTGTTTCCACAATTTCTGCTTTGCTTGGCTCTTACCCATCTCAGCTTTCTGAGATCAACTCTGTTTCTCTGAATGCCACCTTTGCGGATAATCAAACGGTGATTGTTCCCGTCAACTGCTCCTGTGGGAGTGATTACTATCAGACTAACACTTCCTACACTGTCCACAGCACAGAAACGTATTTTTTGATTGCTAACAACACTTTCCAAGGCCTCTTAACCTTTGTCCAGTACTTACTGAGTCACTCGGTCGACTGGGGTGATTCTGTTTCCTACATCAGTGAAACATTTGGTGCAGCCATTGATCTCACTCTTGAATCAAATAGCCTTTCTTCTCAAGGTTTGGTTTATCCCTTTACCACACTTTTGGTTCCTTTTCAACATAAACCCAACATCTCTCAAATCGTGGTGTCTCCTCCTCCTCCACCACCATCTCCATCACCCCCACCTTCATCTTCTTCAGGTGGCTGCTCAAATAAGACATGGATATACGCCGTTGTTGGAGCTGTCGGAGGTATTGTCTTGATATCACTCATTCTCCTTGGTATACTTGTTTTACGTAAACGGTATCCTATGAGGGAAAAGAAAGATGATTCTGCAATAGTGTCAAAGAGTTTCGAGGCAACAGAGAAAACAGAAGGGAAAAGGGTCGGGGAAGAGTCGGAAACGTTGTTGGAGATAATATCCGACATAGCTCAGTCTTTCAAAGTGTACGGATTTAAGGAACTAAAGCTTGCAACGGATAATTTGAGCTCAAGCTGCTGCATCAAAGGGAGTGTTTATCGCAGTATGATTAATGGTGATTTGGCCGCTATTAAAAAGATGGATGGTGATGTGTCGAAAGAGATAGCAATTCTTAACAAAGTCAACCACTCTAATGTGATACGCCTTTCAGGGGTCAGCTTCAACGAAGGCCATTGGTTTCTGGTTTATGAGTATGCTGCTAATGGATCCTTGACTGATTGGATCTTCGTCAACAACATGGACGGAAAATTTTTGAGTTGGAGTCAGATAATACAAATAGCATTGGATGCGGCCACAGGACTTGACTATCTCCATAGTTTCACTTCTCCTCCTCTTATCCACAAGGATCTCAAGAGTGATAACATACTTCTGGAAACTGATTTGAGGGCCAAGATTGCTAACTTGGGGCTTGCAAGATCAGTAGAAGGAGACGGTGATGAATTCCCCATGACGAGGCATATTGTTGGAACAACAGGCTATATGTCTCCTGAGTATCTAGAAAATGGCATAGTCTCTACAAAACAAGATGAGAAGCTGCGGGATTTTGTGGATCCTCACCTGAATGGGAAGTTTCCGTTGGAACTTGCTGCGTTTGTGGTTAGAATAATTGATAATTGCTTGAGGAAAGATCCGGCGAGTCGCCCTGCCATACATGAAATAGTGTCGTCTCTCTCTCTAACGTTGAACTCTTCATTGGCATGGGAAAGATCAGTGACCGTCTCAGGAGACCAGAGCTTTAGCAGAAGCTCTTAA 2196 0.4362 MDALQTLTSLAYAFDASVSTSIASKSSSAQAAFQWGGTIFDLFLLILNRFGQDSRTQSTLLVLYLFISLPEVLFKILREQFGCWIAFLAIVANMFFPHTFPVPVSRFLLFVIAPNWIAHGLRNSMVGGVFCLAIGIVVIIEIRGNGGFRNCSCNFRCLAYYLCIAFLFCFTILYLCLGNCCPLILGQQPYYIGLGTVACPRKGNSKYIRGYPCNGVAHSCQAYLIFRSQPLYCSVSTISALLGSYPSQLSEINSVSLNATFADNQTVIVPVNCSCGSDYYQTNTSYTVHSTETYFLIANNTFQGLLTFVQYLLSHSVDWGDSVSYISETFGAAIDLTLESNSLSSQGLVYPFTTLLVPFQHKPNISQIVVSPPPPPPSPSPPPSSSSGGCSNKTWIYAVVGAVGGIVLISLILLGILVLRKRYPMREKKDDSAIVSKSFEATEKTEGKRVGEESETLLEIISDIAQSFKVYGFKELKLATDNLSSSCCIKGSVYRSMINGDLAAIKKMDGDVSKEIAILNKVNHSNVIRLSGVSFNEGHWFLVYEYAANGSLTDWIFVNNMDGKFLSWSQIIQIALDAATGLDYLHSFTSPPLIHKDLKSDNILLETDLRAKIANLGLARSVEGDGDEFPMTRHIVGTTGYMSPEYLENGIVSTKQDEKLRDFVDPHLNGKFPLELAAFVVRIIDNCLRKDPASRPAIHEIVSSLSLTLNSSLAWERSVTVSGDQSFSRSS 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0219 731 Gene3D Transferase(Phosphotransferase) domain 1 548 655 - -
Lele51g0219 731 Pfam Cold acclimation protein WCOR413 20 159 IPR008892 GO:0016020
Lele51g0219 731 Gene3D Phosphorylase Kinase; domain 1 456 546 - -
Lele51g0219 731 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 656 717 - -
Lele51g0219 731 SUPERFAMILY Protein kinase-like (PK-like) 468 705 IPR011009 -
Lele51g0219 731 Gene3D Transferase(Phosphotransferase) domain 1 656 715 - -
Lele51g0219 731 ProSiteProfiles Protein kinase domain profile. 444 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele51g0219 731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 593 605 IPR008271 GO:0004672|GO:0006468
Lele51g0219 731 MobiDBLite consensus disorder prediction 368 384 - -
Lele51g0219 731 SMART serkin_6 462 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele51g0219 731 ProSiteProfiles LysM domain profile. 313 357 IPR018392 -
Lele51g0219 731 Pfam Protein kinase domain 506 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele51g0219 731 MobiDBLite consensus disorder prediction 368 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0219 Lele-ChrLele51 1218738 1223844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0219 168 718 Receptor kinase-like Gene Family AT2G23770 37.540 3.35e-120 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lele51g0219 Pkinase 1.7e-27 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0202 49 1202644 1204562 Lele51g0219 51 1218738 1223844 hybridization
Lele50g0217 50 1277933 1279858 Lele51g0219 51 1218738 1223844 hybridization