Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0218 ATGGCCTCTCAAAGCTTCAATTCTACCCTCTGTCACTTTGCTTTTGCTATTGCAATCCTTTTCATTTTTTCTCCGGCCCTTACTTCTGCCAAGATGACTGGGTTGAGCATGAACGTGATTGATAAATGTTGGAGAACGAACTCCCTGTGGCGGAGGCATCGCCCGCAACTTGCAACTTGTTCTGTTGGGTACGCCGGCAAGATGACCAACAACATTGGCAAAGACCTCGTCCACTACGAAGTCACTGATCCTAGTGACGACCCAATAAACCCCAAACCTGGCACGTTGAGATATGGAGCTTCCATGATTCAGCGCAAAGTGTGGATCACATTCCAAAGAGACATGAATATTCAGCTTCTCAAGCCCCTTCTCATCAGCAGCTTCACCGCCATTGATGGCCGAGGCGTCACCGTTCACCTTGCTCGTAATGCATGCTTGATGATCTTCAAGGCCACCAACATCATAATACATGGCCTTTGGATTCACCACTGTAAGCCTCAAGCTGCGGGGATGGTGGTGGGTCCAGAAGGGAAGGTAATTCACGTGGGTCAGGTGGATGGGGATGCCATTAGATTGGTGACAGCGTCCAAGGTATGGATTGACCATAATACGCTGTATGATTGTCAAGATGGCCTTCTCGATGTGACGAGGGGTTCCACCGACGTGACCATCTCTAACAATTGGTTTAGAGACCAAGACAAGGTTATGCTTCTCGGACACGACGACGGTTACGCCAGGGACAAAAACATGAAGGTCACTATGGTGTACAACCATTTTGGACCTAACTGCAACCAACGCATGCCCAGAATTCGTCATGGGTACGCACATGTGGCCAACAATCTATACCAAGGATGGGTGCAATACGCCATTGGTGGAAGCATGGGACCCAGCCTCAAAAGTGAGGCCAACCTCTTCATAGCACCAACATCTGGAAGCAAAGAGGTGACATGGAGAAATGGGAACATGGGGGAGTGGGAATTCCATTCGGTGAGGGATGTGTTTGAGAACGGAGCATGCTTCACAGAAACAAAAGGAGCGCGCGTGCCAAAGCCTTATTATAACAGGGAACAGCTTTTTGGAGTTGCAGATGGGAAATATGTAAGGGCATTGACAAGATCATCAGGCGCCTTACGTTGCACCAAAACCTCCAGATGTTGA 1158 0.4896 MASQSFNSTLCHFAFAIAILFIFSPALTSAKMTGLSMNVIDKCWRTNSLWRRHRPQLATCSVGYAGKMTNNIGKDLVHYEVTDPSDDPINPKPGTLRYGASMIQRKVWITFQRDMNIQLLKPLLISSFTAIDGRGVTVHLARNACLMIFKATNIIIHGLWIHHCKPQAAGMVVGPEGKVIHVGQVDGDAIRLVTASKVWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFRDQDKVMLLGHDDGYARDKNMKVTMVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMGPSLKSEANLFIAPTSGSKEVTWRNGNMGEWEFHSVRDVFENGACFTETKGARVPKPYYNREQLFGVADGKYVRALTRSSGALRCTKTSRC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0218 385 ProSiteProfiles Caspase family p10 domain profile. 298 339 IPR002138 GO:0004197|GO:0006508
Lele51g0218 385 SMART amb_all 114 311 IPR002022 -
Lele51g0218 385 Pfam Pectate lyase 143 305 IPR002022 -
Lele51g0218 385 SUPERFAMILY Pectin lyase-like 59 344 IPR011050 -
Lele51g0218 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Lele51g0218 385 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Lele51g0218 385 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Lele51g0218 385 PRINTS Pollen allergen Amb family signature 85 110 IPR018082 -
Lele51g0218 385 PRINTS Pollen allergen Amb family signature 186 207 IPR018082 -
Lele51g0218 385 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Lele51g0218 385 Gene3D - 37 378 IPR012334 -
Lele51g0218 385 PANTHER PECTATE LYASE 18-RELATED 35 382 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0218 Lele-ChrLele51 1216638 1217989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0218 68 320 Polysaccharide Lyase AT5G09280 71.542 1.48e-143 407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0218 51 1216638 1217989 Lele51g0218 51 1216638 1217989 ECH
Lele49g0201 49 1200538 1201889 Lele51g0218 51 1216638 1217989 hybridization
Lele50g0215 50 1267809 1271866 Lele51g0218 51 1216638 1217989 hybridization